Browse Element(s) Details


OsAffx.22940.1.S1_s_at

Description tigr:9631.m06063
TID=OsAffx.22940.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6109011/11transposon protein, putative, Mutator sub-class
LOC_Os05g4076011/11Transposable element protein, putative, MuDR
LOC_Os06g4448011/11transposon protein, putative, Mutator sub-class
LOC_Os08g3962011/11transposon protein, putative, Mutator sub-class
LOC_Os01g1204011/11Transposable element protein, putative, MuDR
LOC_Os01g5718011/11hypothetical protein
LOC_Os08g0366011/11transposon protein, putative, Mutator sub-class
LOC_Os12g0467011/11transposon protein, putative, Mutator sub-class
LOC_Os10g3322011/11Transposable element protein, putative, MuDR
LOC_Os06g4190011/11transposon protein, putative, Mutator sub-class
LOC_Os03g6146011/11hypothetical protein
LOC_Os01g1429011/11hypothetical protein
LOC_Os02g4663011/11SWIM zinc finger family protein
LOC_Os03g1371011/11transposon protein, putative, Mutator sub-class
LOC_Os06g2021011/11transposon protein, putative, Mutator sub-class
LOC_Os01g5422011/11transposon protein, putative, Mutator sub-class
LOC_Os02g2933011/11transposon protein, putative, Mutator sub-class
LOC_Os05g5074011/11Transposable element protein, putative, MuDR
LOC_Os11g3588010/11transposon protein, putative, Mutator sub-class
LOC_Os08g0545010/11transposon protein, putative, Mutator sub-class
LOC_Os03g2820410/11transposon protein, putative, Mutator sub-class
LOC_Os01g2725010/11transposon protein, putative, Mutator sub-class
LOC_Os11g3308010/11transposon protein, putative, Mutator sub-class
LOC_Os07g1339010/11Transposable element protein, putative, MuDR
LOC_Os02g2751010/11transposon protein, putative, Mutator sub-class
LOC_Os08g0682010/11transposon protein, putative, Mutator sub-class
LOC_Os08g4114010/11hypothetical protein
LOC_Os07g302309/11transposon protein, putative, Mutator sub-class
LOC_Os07g343109/11Transposable element protein, putative, MuDR
LOC_Os01g743809/11hypothetical protein
LOC_Os02g462309/11transposon protein, putative, Mutator sub-class
LOC_Os07g325808/11Transposable element protein, putative, MuDR
LOC_Os05g068508/11calcineurin-like phosphoesterase family protein, putative
LOC_Os12g395708/11Transposable element protein, putative, MuDR
LOC_Os02g520507/11transposon protein, putative, Mutator sub-class
LOC_Os02g184407/11SWIM zinc finger family protein
LOC_Os03g556907/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g061107/11transposon protein, putative, Mutator sub-class
LOC_Os01g156206/11transposon protein, putative, Mutator sub-class
LOC_Os08g255806/11Transposable element protein, putative, MuDR
LOC_Os08g366706/11hypothetical protein
LOC_Os07g057706/11transposon protein, putative, Mutator sub-class
LOC_Os01g352204/11transposon protein, putative, Mutator sub-class
LOC_Os05g068803/11transposon protein, putative, unclassified
LOC_Os11g062503/11hypothetical protein
LOC_Os06g192302/11hypothetical protein
LOC_Os11g062802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g042902/11Transposable element protein, putative, MuDR
LOC_Os01g608802/11transposon protein, putative, Mutator sub-class
LOC_Os07g172402/11transposon protein, putative, Mutator sub-class
LOC_Os01g207602/11SWIM zinc finger family protein
LOC_Os02g183602/11transposon protein, putative, Mutator sub-class
LOC_Os12g262042/11transposon protein, putative, Mutator sub-class
LOC_Os11g332902/11Transposable element protein, putative, MuDR
LOC_Os12g273901/11hypothetical protein
LOC_Os05g477201/11hypothetical protein
LOC_Os01g034521/11hypothetical protein
LOC_Os12g215101/11Transposable element protein, putative, MuDR
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61060Os.10716.1.S1_at11/111+35655627..35658056Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g61070Os.6864.1.S1_at11/111+35659554..35660353heavy metal-associated domain containing protein, expressed
LOC_Os01g61080Os.31521.1.S1_at11/111+35674831..35677395DNA-binding protein, putative, expressed
LOC_Os01g61080OsAffx.13395.1.S1_x_at1/111+35674831..35677395DNA-binding protein, putative, expressed
LOC_Os01g61090OsAffx.22940.5.S1_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.1.S1_s_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.2.S1_s_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090Os.35344.3.S1_x_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.5.S1_x_at10/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090Os.35344.18.S1_x_at9/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.2.S1_at8/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.3.S1_x_at7/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.31552.2.S1_at1/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61100OsAffx.23878.1.S1_at11/111+35689280..35695661transposon protein, putative, unclassified
LOC_Os01g61110OsAffx.23879.1.S1_at11/111+35696002..35706382Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g61110Os.28778.1.S1_at11/111+35696002..35706382Ulp1 protease family, C-terminal catalytic domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22940.1.S1_s_at--857--26735Chr11:20575791..20575815 (25 bp)
AAGCGATCCTTTTGCTGGTTGGTTT
LOC_Os11g35880
OsAffx.22940.1.S1_s_at--880--108144Chr11:20575809..20575833 (25 bp)
TTGGTTTCCACCATGGTGTGACCGT
LOC_Os11g35880
OsAffx.22940.1.S1_s_at--110--73736Chr11:20575826..20575850 (25 bp)
GTGACCGTCCTTTGTGCGATTGTGG
LOC_Os11g35880
OsAffx.22940.1.S1_s_at--616--8339Chr11:20575853..20575877 (25 bp)
ATGGATGCATACTCAAGTCTTCCCT
LOC_Os11g35880
OsAffx.22940.1.S1_s_at--591--11540Chr11:20575868..20575892 (25 bp)
AGTCTTCCCTCATGATACAAACTCG
LOC_Os11g35880
OsAffx.22940.1.S1_s_at--1043--54741Chr11:20575917..20576017 (25 bp)
GAACTTTGATCAGACATATCGTCCA
LOC_Os11g35880
OsAffx.22940.1.S1_s_at--271--101540Chr11:20576009..20576033 (25 bp)
TATCGTCCAATGTGCAACTTCATCG
LOC_Os11g35880
OsAffx.22940.1.S1_s_at--717--51538Chr11:20576022..20576046 (25 bp)
GCAACTTCATCGAGTGGGTAGACAT
LOC_Os11g35880
OsAffx.22940.1.S1_s_at--676--72142Chr11:20576133..20576157 (25 bp)
GTCGAATTGCTGCTGAGGCTTTAGA
LOC_Os11g35880
OsAffx.22940.1.S1_s_at--343--5352Chr11:20576793..20576817 (25 bp)
ATCGACAATGTCACTCCATCATATC
LOC_Os11g35880
OsAffx.22940.1.S1_s_at--1116--70946Chr11:19190635..19190659 (25 bp)
GTCACTCCATCATATCATGGCCAGA
LOC_Os11g33290
Target Sequence 
AAGCGATCCTTTTGCTGGTTGGTTTCCACCATGGTGTGACCGTCCTTTGTGCGATTGTGGGGATGGATGCATACTCAAGT
CTTCCCTCATGATACAAACTCGGGGCAGGAGATTCTTCCAATGCGCGAACTTTGATCAGACATATCGTCCAATGTGCAAC
TTCATCGAGTGGGTAGACATGGAGAACCCACAAAACGACGGAACCCGTGCTTACCCACGTAGTGAAACAAGATCGGACTA
CCTAAGGNGGAAGGATGAGCATGAACGTCGAATTGCTGCTGAGGCTTTAGAATGGCACGTAAATCCCCTNNGACTCCCCA
CGTGGCGTGAGCGTCCGNAGTGTCGTTGTGGTGACCGTTGTCAGGTCATAAGGTCCGGCAATCCAANGATGGGTGGATTT
ACTCGATGGATCGACAATGTCACTCCATCATATCATGGCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22940.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis