Browse Element(s) Details


OsAffx.23115.1.S1_at

Description tigr:9629.m00396
TID=OsAffx.23115.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0476011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04730Os.45407.1.S1_s_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.26422.1.S1_x_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.26422.1.S1_s_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730OsAffx.10909.1.S1_at10/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.45407.1.S1_x_at5/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04740OsAffx.22789.2.A1_at10/111+2137667..2138893hypothetical protein
LOC_Os01g04750Os.45405.1.A1_at11/111+2151128..2152796DNA-binding protein RAV1, putative, expressed
LOC_Os01g04760OsAffx.23115.1.S1_at11/111+2159525..2159773hypothetical protein
LOC_Os01g04770NANA1+2178148..2179056retrotransposon protein, putative, unclassified
LOC_Os01g04780NANA1+2179567..2188744retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23115.1.S1_at--262--6391Chr01:2159717..2159741 (25 bp)
GATCGACAATTCAGGCACCCAAAAT
LOC_Os01g04760
OsAffx.23115.1.S1_at--264--9311Chr01:2159707..2159731 (25 bp)
TCAGGCACCCAAAATTTCGGTCCGG
LOC_Os01g04760
OsAffx.23115.1.S1_at--433--9431Chr01:2159691..2159715 (25 bp)
TCGGTCCGGTCTTCGGTCATAACCG
LOC_Os01g04760
OsAffx.23115.1.S1_at--1016--7791Chr01:2159677..2159701 (25 bp)
GGTCATAACCGAAGTAACCGCATGT
LOC_Os01g04760
OsAffx.23115.1.S1_at--850--9791Chr01:2159672..2159696 (25 bp)
TAACCGAAGTAACCGCATGTTGTTG
LOC_Os01g04760
OsAffx.23115.1.S1_at--613--1171Chr01:2159665..2159689 (25 bp)
AGTAACCGCATGTTGTTGAGAAAGG
LOC_Os01g04760
OsAffx.23115.1.S1_at--1109--3091Chr01:2159646..2159670 (25 bp)
GAAAGGGCCCGGAGCATGGTCTAGT
LOC_Os01g04760
OsAffx.23115.1.S1_at--450--8231Chr01:2159610..2159634 (25 bp)
GGCAAAGACGGGAGATAGCATCTGT
LOC_Os01g04760
OsAffx.23115.1.S1_at--796--4971Chr01:2159593..2159617 (25 bp)
GCATCTGTGGATGACGACTTGTCGA
LOC_Os01g04760
OsAffx.23115.1.S1_at--10--671Chr01:2159566..2159590 (25 bp)
ATGAAGGGCGCTGGTCTAGACTTGC
LOC_Os01g04760
OsAffx.23115.1.S1_at--212--4731Chr01:2159557..2159581 (25 bp)
GCTGGTCTAGACTTGCTGAGGATTA
LOC_Os01g04760
Target Sequence 
GATCGACAATTCAGGCACCCAAAATTTCGGTCCGGTCTTCGGTCATAACCGAAGTAACCGCATGTTGTTGAGAAAGGGCC
CGGAGCATGGTCTAGTGGAGGATGGGAGGCAAAGACGGGAGATAGCATCTGTGGATGACGACTTGTCGAAGATGAAGGGC
GCTGGTCTAGACTTGCTGAGGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis