Browse Element(s) Details


OsAffx.23133.1.S1_at

Description tigr:9629.m00550
TID=OsAffx.23133.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-locus glycoprotein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0624011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06160OsAffx.16187.1.S1_at1/111+2931530..2934520retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06170Os.28943.1.S1_x_at2/111+2938130..2941180retrotransposon protein, putative, unclassified
LOC_Os01g06180NANA1+2941800..2944537transposon protein, putative, unclassified
LOC_Os01g06200NANA1+2946899..2949815retrotransposon protein, putative, unclassified
LOC_Os01g06210Os.1899.1.S1_at1/111+2951316..2952306PrMC3, putative
LOC_Os01g06220Os.33885.1.S1_at11/111+2953968..2955241PrMC3, putative, expressed
LOC_Os01g06230NANA1+2957996..2958271Auxin responsive protein
LOC_Os01g06240OsAffx.23133.1.S1_at11/111+2959224..2961719D-mannose binding lectin family protein, expressed
LOC_Os01g06250OsAffx.10935.1.S1_x_at11/111+2963126..2964148Dirigent-like protein
LOC_Os01g06250OsAffx.10935.1.S1_at11/111+2963126..2964148Dirigent-like protein
LOC_Os01g06260OsAffx.10558.2.S1_s_at11/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.2.S1_at11/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.1.S1_x_at9/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.1.S1_at5/111+2965956..2967533hypothetical protein
LOC_Os01g06270Os.19218.1.S1_x_at11/111+2967932..2976115expressed protein
LOC_Os01g06270Os.37997.1.S1_s_at11/111+2967932..2976115expressed protein
LOC_Os01g06270OsAffx.10936.1.S1_x_at10/111+2967932..2976115expressed protein
LOC_Os01g06280Os.33613.1.S1_at11/111+2979344..2982962Protein kinase domain containing protein, expressed
LOC_Os01g06290Os.18216.2.S1_x_at11/111+2983116..2986082RNA recognition motif family protein, expressed
LOC_Os01g06290Os.18216.1.S1_at10/111+2983116..2986082RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23133.1.S1_at--1002--471Chr01:2959779..2959803 (25 bp)
ATCGTTTCTTCCCAAGGTCGCGGAT
LOC_Os01g06240
OsAffx.23133.1.S1_at--187--1371Chr01:2959718..2959742 (25 bp)
AGAGCACTCACCACCATGAGAGGAA
LOC_Os01g06240
OsAffx.23133.1.S1_at--787--3471Chr01:2959593..2959617 (25 bp)
CAGGAGGAACTCAGCCAGATCAGAA
LOC_Os01g06240
OsAffx.23133.1.S1_at--675--9891Chr01:2959545..2959569 (25 bp)
TACTTCTACATCCACTGACACTGAT
LOC_Os01g06240
OsAffx.23133.1.S1_at--740--6231Chr01:2959523..2959547 (25 bp)
GATGGCAACTATTCTGTCTACTTCC
LOC_Os01g06240
OsAffx.23133.1.S1_at--560--6031Chr01:2959468..2959492 (25 bp)
GAGATGTGATGAGCTTGCTGGACCA
LOC_Os01g06240
OsAffx.23133.1.S1_at--819--5771Chr01:2959353..2959377 (25 bp)
GACGATGGGTCAAGTGGTCCAGATT
LOC_Os01g06240
OsAffx.23133.1.S1_at--287--6571Chr01:2959332..2959356 (25 bp)
GATTCTTGAGGGTGTCTTGGACTGC
LOC_Os01g06240
OsAffx.23133.1.S1_at--965--9271Chr01:2959299..2959323 (25 bp)
TCCGTTGCCGAGGTTGCTTCAGAGA
LOC_Os01g06240
OsAffx.23133.1.S1_at--695--10771Chr01:2959270..2959294 (25 bp)
TTGAGAGGCCGTCTTCAGTTAGCAC
LOC_Os01g06240
OsAffx.23133.1.S1_at--752--1191Chr01:2959254..2959278 (25 bp)
AGTTAGCACCAGCACACCAGTTTTC
LOC_Os01g06240
Target Sequence 
ATCGTTTCTTCCCAAGGTCGCGGATTTTGGGATGGCAAAGTTTGTAGGGAGAGATTTCAGCAGAGCACTCACCACCATGA
GAGGAACCATAGGTTATCTTGCGCCTGAATGGATTAGTGGAACAGCAATTACACCGAAAGTAGATGTTTACAGCTATGGA
ATGGTGCTGCTTGAGCTAGTGTCAGGCAGGAGGAACTCAGCCAGATCAGAAGAAGAATGCACTACTACTACCACTACTTC
TACATCCACTGACACTGATGGCAACTATTCTGTCTACTTCCCTGTGCAAGCTTCAAGGAAGCTTCTAGATGGAGATGTGA
TGAGCTTGCTGGACCAGAAGCTGTGTGGTGAAGCGGACTTGAAGGAGGTTGAGAGAGTGTGCAAGATCGGTTGCTGGTGC
ATTCAAGAGGATGAGGTTGATCGGCCGACGATGGGTCAAGTGGTCCAGATTCTTGAGGGTGTCTTGGACTGCGACATGCC
TCCGTTGCCGAGGTTGCTTCAGAGAATCTTTGAGAGGCCGTCTTCAGTTAGCACCAGCACACCAGTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis