Browse Element(s) Details


OsAffx.23151.1.S1_x_at

Description tigr:9629.m00692
TID=OsAffx.23151.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g076005/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07570Os.20276.1.S1_at11/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g07570Os.23670.1.A1_at11/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g07570OsAffx.661.1.S1_x_at1/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g07579NANA1+3638973..3639226NA
LOC_Os01g07590Os.15606.1.S1_at11/111+3642389..3647164universal stress protein family protein, expressed
LOC_Os01g07590Os.15606.1.S2_at6/111+3642389..3647164universal stress protein family protein, expressed
LOC_Os01g07600Os.54010.1.S1_at11/111+3649075..3653252expressed protein
LOC_Os01g07600OsAffx.23151.1.S1_x_at5/111+3649075..3653252expressed protein
LOC_Os01g07610Os.53998.1.S1_at11/111+3658490..3661001pentatricopeptide, putative, expressed
LOC_Os01g07620Os.57176.1.S1_at10/111+3661844..3662846expressed protein
LOC_Os01g07630Os.49171.1.A1_x_at11/111+3664278..3669811BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g07630Os.49171.1.A1_at11/111+3664278..3669811BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g07640OsAffx.23152.1.S1_at11/111+3673105..3677462TPR Domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23151.1.S1_x_at--1025--6331Chr01:3652465..3652489 (25 bp)
GATGCTTCAAGACTGTATGATCCCT
LOC_Os01g07600
OsAffx.23151.1.S1_x_at--1032--6371Chr01:3652483..3652633 (25 bp)
GATCCCTTGAAGATGACAGTGCCGC
LOC_Os01g07600
OsAffx.23151.1.S1_x_at--913--5651Chr01:3652623..3652647 (25 bp)
GACAGTGCCGCCGAAGATTTCACAG
LOC_Os01g07600
OsAffx.23151.1.S1_x_at--565--10071Chr01:3652652..3652676 (25 bp)
TAGGCAAAGACCGAGCATGGCTCCA
LOC_Os01g07600
OsAffx.23151.1.S1_x_at--1122--2611Chr01:3652681..3652705 (25 bp)
AACCTTCGTCGGCTACATGAAGCGA
LOC_Os01g07600
OsAffx.23151.1.S1_x_at--1056--5291Chr01:3653707..3653729 (23 bp)
GAAGGTGGGCACTTCAAACCCCAGT
NONE
OsAffx.23151.1.S1_x_at--123--10491Chr01:3653717..3653741 (25 bp)
TTCAAACCCCAGTGACTCAAAACAA
NONE
OsAffx.23151.1.S1_x_at--940--6611Chr01:3653745..3653765 (21 bp)
GTTGGCTTTTATATTTTGTGGATGA
NONE
OsAffx.23151.1.S1_x_at--336--5811Chr01:3656044..3656068 (25 bp)
GACGCCCGATTGCTGCTGCTTCTAC
NONE
OsAffx.23151.1.S1_x_at--572--7131Chr01:3656088..3656112 (25 bp)
GTCTCGGCAGCCTAGTCGTTGATAC
NONE
OsAffx.23151.1.S1_x_at--291--1151Chr01:3656101..3656125 (25 bp)
AGTCGTTGATACTTGCATCATCGTC
NONE
Target Sequence 
GATGCTTCAAGACTGTATGATCCCTTGAAGATGACAGTGCCGCCGAAGATTTCACAGAAGATAGGCAAAGACCGAGCATG
GCTCCATGCCAACCTTCGTCGGCTACATGAAGCGATGATGATCCAGAAAGGGAAAGAGAAGGTGGGCACTTCAAACCCCA
GTGACTCAAAACAATATGTTGGCTTTTATATTTTGTGGATGAGGCGAAGAGACGCGAGGGGAAGAGTACCCATCGCCGCC
GTGAAGGGCCTCGTCGGCGCCGCCCTCCGCCACTACAACGCCAACAACAAGGCCGGCGCCGGCTTCATCCCGCTCGAGCC
TTCCATGGCCGCGTGCAGGGCCTGCTGCTGCGGCCCCAAGGGGTTCACGCGCCTCGTCGGCTTCTGGGCTCGCCGCCGGA
GGAGCGGCACGCCGCCGCCGGGGACCTCCTCCTCGGCGGCCGGTCGCTGCCGCCGGAGGAGGAACACTGCGCCGCCGCCG
GGGGCGACGCCCGATTGCTGCTGCTTCTACGCCGAGCTGCACTTCGACCGTCTCGGCAGCCTAGTCGTTGATACTTGCAT
CATCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23151.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis