Browse Element(s) Details


OsAffx.23152.1.S1_at

Description tigr:9629.m00696
TID=OsAffx.23152.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ankyrin-like protein-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0764011/11TPR Domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07600Os.54010.1.S1_at11/111+3649075..3653252expressed protein
LOC_Os01g07600OsAffx.23151.1.S1_x_at5/111+3649075..3653252expressed protein
LOC_Os01g07610Os.53998.1.S1_at11/111+3658490..3661001pentatricopeptide, putative, expressed
LOC_Os01g07620Os.57176.1.S1_at10/111+3661844..3662846expressed protein
LOC_Os01g07630Os.49171.1.A1_x_at11/111+3664278..3669811BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g07630Os.49171.1.A1_at11/111+3664278..3669811BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g07640OsAffx.23152.1.S1_at11/111+3673105..3677462TPR Domain containing protein
LOC_Os01g07650NANA1+3678945..3679166hypothetical protein
LOC_Os01g07660Os.55117.2.S1_x_at11/111+3679748..3684209expressed protein
LOC_Os01g07660Os.55117.2.S1_at11/111+3679748..3684209expressed protein
LOC_Os01g07670OsAffx.23153.1.S1_at9/111+3686742..3689507hypothetical protein
LOC_Os01g07680OsAffx.23154.1.S1_at11/111+3691657..3692103hypothetical protein
LOC_Os01g07700Os.14395.1.S1_at11/111+3692957..3696520expressed protein
LOC_Os01g07710OsAffx.10956.1.S1_at11/111+3699250..3701525hypothetical protein
LOC_Os01g07720Os.16184.1.S1_at11/111+3702116..3705791ALG3 protein, expressed
LOC_Os01g07720OsAffx.24443.1.S1_at1/111+3702116..3705791ALG3 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23152.1.S1_at--370--5331Chr01:3675366..3675390 (25 bp)
GAAGTTCGACAACACCGACGCAAAG
LOC_Os01g07640
OsAffx.23152.1.S1_at--128--6311Chr01:3675296..3675320 (25 bp)
GATGAGGCACTCTCAGATGCTCAGA
LOC_Os01g07640
OsAffx.23152.1.S1_at--842--3871Chr01:3675249..3675273 (25 bp)
CTGGGCGAAAGGCTATTACCGTCAA
LOC_Os01g07640
OsAffx.23152.1.S1_at--472--2931Chr01:3675226..3675250 (25 bp)
AAGGAATGGCCTTCTCTTTGCTACA
LOC_Os01g07640
OsAffx.23152.1.S1_at--182--10151Chr01:3675045..3675069 (25 bp)
TATGCCAGTGCTTCTTATGTGCTTC
LOC_Os01g07640
OsAffx.23152.1.S1_at--324--10091Chr01:3675030..3675054 (25 bp)
TATGTGCTTCGCAGGGCCTTAAAGT
LOC_Os01g07640
OsAffx.23152.1.S1_at--365--1151Chr01:3674892..3675010 (25 bp)
AGTCGCCAAAGCATTGCGCTGCTAT
LOC_Os01g07640
OsAffx.23152.1.S1_at--910--3051Chr01:3674725..3674749 (25 bp)
AATCTGGTCTAGCTTTTGTTCATCA
LOC_Os01g07640
OsAffx.23152.1.S1_at--320--5551Chr01:3674697..3674721 (25 bp)
GAAACGAGATTGGAGCCCCGCAGCT
LOC_Os01g07640
OsAffx.23152.1.S1_at--494--8351Chr01:3673167..3673191 (25 bp)
GGCTGGATGTATTTGCCACCTGTAA
LOC_Os01g07640
OsAffx.23152.1.S1_at--932--8731Chr01:3673147..3673171 (25 bp)
TGTAAACAATGTGCCGGAATCCTCT
LOC_Os01g07640
Target Sequence 
GAAGTTCGACAACACCGACGCAAAGTTATATTCAAACAGGAGTGCTTGCTGGTTAAACCTTGGCATAGGCGATGAGGCAC
TCTCAGATGCTCAGATCTGCAGCAAGATGCAACCGGACTGGGCGAAAGGCTATTACCGTCAAGGAATGGCCTTCTCTTTG
CTACAGGATTATGCCAGTGCTTCTTATGTGCTTCGCAGGGCCTTAAAGTTGGATCCACAAAATGCCACAGTCGCCAAAGC
ATTGCGCTGCTATGAGAATAAGATATATATGACTGAAAATGTGTTGGAAAAGAGAGGGGATGTCTTGGAAACTGCGTGTC
CAAGGATGGAAGAATCTGGTCTAGCTTTTGTTCATCAGAAGAAACGAGATTGGAGCCCCGCAGCTGCAGGGAGGAGTGTT
CCAGATGCAACATTTCAAATTGACAAAAAGATATTGCCAGTTTGGGTTAAGATCTGGGGCGTGCCTCGTAGACCGTTGTT
GGGTTGTGGCTGGATGTATTTGCCACCTGTAAACAATGTGCCGGAATCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis