Browse Element(s) Details


OsAffx.23154.1.S1_at

Description tigr:9629.m00700
TID=OsAffx.23154.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0768011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07630Os.49171.1.A1_x_at11/111+3664278..3669811BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g07630Os.49171.1.A1_at11/111+3664278..3669811BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g07640OsAffx.23152.1.S1_at11/111+3673105..3677462TPR Domain containing protein
LOC_Os01g07650NANA1+3678945..3679166hypothetical protein
LOC_Os01g07660Os.55117.2.S1_x_at11/111+3679748..3684209expressed protein
LOC_Os01g07660Os.55117.2.S1_at11/111+3679748..3684209expressed protein
LOC_Os01g07670OsAffx.23153.1.S1_at9/111+3686742..3689507hypothetical protein
LOC_Os01g07680OsAffx.23154.1.S1_at11/111+3691657..3692103hypothetical protein
LOC_Os01g07700Os.14395.1.S1_at11/111+3692957..3696520expressed protein
LOC_Os01g07710OsAffx.10956.1.S1_at11/111+3699250..3701525hypothetical protein
LOC_Os01g07720Os.16184.1.S1_at11/111+3702116..3705791ALG3 protein, expressed
LOC_Os01g07720OsAffx.24443.1.S1_at1/111+3702116..3705791ALG3 protein, expressed
LOC_Os01g07730Os.51043.1.S1_at11/111+3708014..3710455Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os01g07740Os.7205.1.A1_at11/111+3710534..3715433DEAD/DEAH box helicase family protein, expressed
LOC_Os01g07750Os.10212.1.S1_at10/111+3716917..3719968expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23154.1.S1_at--548--7891Chr01:3692042..3692066 (25 bp)
GGTTCGTGGCCTTCTACTACCCATC
LOC_Os01g07680
OsAffx.23154.1.S1_at--1027--4891Chr01:3692003..3692027 (25 bp)
GCTTCGGCGGGATAGCCTACATGTT
LOC_Os01g07680
OsAffx.23154.1.S1_at--1115--8351Chr01:3691998..3692022 (25 bp)
GGCGGGATAGCCTACATGTTCTGCT
LOC_Os01g07680
OsAffx.23154.1.S1_at--990--7651Chr01:3691995..3692019 (25 bp)
GGGATAGCCTACATGTTCTGCTTCT
LOC_Os01g07680
OsAffx.23154.1.S1_at--357--311Chr01:3691992..3692016 (25 bp)
ATAGCCTACATGTTCTGCTTCTGCG
LOC_Os01g07680
OsAffx.23154.1.S1_at--758--4451Chr01:3691989..3692013 (25 bp)
GCCTACATGTTCTGCTTCTGCGCCA
LOC_Os01g07680
OsAffx.23154.1.S1_at--19--9291Chr01:3691937..3691961 (25 bp)
TCCGGCGCCGCGATCTGTGGAGGCT
LOC_Os01g07680
OsAffx.23154.1.S1_at--479--5071Chr01:3691796..3691820 (25 bp)
GCACGGTGCGGGTCGGCATCCCTCT
LOC_Os01g07680
OsAffx.23154.1.S1_at--303--551Chr01:3691779..3691803 (25 bp)
ATCCCTCTCGCGTGGCTTGCGTGCG
LOC_Os01g07680
OsAffx.23154.1.S1_at--261--8251Chr01:3691752..3691776 (25 bp)
GGCACGGGCGCTGGCTTCACCTTTG
LOC_Os01g07680
OsAffx.23154.1.S1_at--1015--8391Chr01:3691746..3691770 (25 bp)
GGCGCTGGCTTCACCTTTGCCATCG
LOC_Os01g07680
Target Sequence 
GGTTCGTGGCCTTCTACTACCCATCCATCCCCTTCATCGGCTTCGGCGGGATAGCCTACATGTTCTGCTTCTGCGCCATG
CCCGACGACACCTTCTCCGGCTGCGTCCGGCGCCGCGATCTGTGGAGGCTGACGCCCCTCCTGCTGTGCGCGGCCTACAT
GTCGCTGCTCGCGCTGGTGAGCATGCACACGCGCCTCTTCCTGCCGCGCGCGCCCAACGCCGTGCTCACGGACCTCCTCG
ACGTCGGCACGGTGCGGGTCGGCATCCCTCTCGCGTGGCTTGCGTGCGTCGGCACGGGCGCTGGCTTCACCTTTGCCATC
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis