Browse Element(s) Details


OsAffx.23189.1.S1_s_at

Description gb:NM_188314.1
DB_XREF= gi:34903711
GEN=P0489A05.22
TID=OsAffx.23189.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0489A05.22 (P0489A05.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1059011/11TWIN SISTER of FT protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10580Os.15198.1.S1_at11/111+5636571..5638292B-box zinc finger family protein, expressed
LOC_Os01g10590OsAffx.23189.1.S1_s_at11/111+5649395..5652154TWIN SISTER of FT protein, putative, expressed
LOC_Os01g10590OsAffx.23189.2.S1_at10/111+5649395..5652154TWIN SISTER of FT protein, putative, expressed
LOC_Os01g10590OsAffx.23189.1.S1_at6/111+5649395..5652154TWIN SISTER of FT protein, putative, expressed
LOC_Os01g10600Os.45980.1.S1_s_at10/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600Os.45980.1.S1_at8/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600OsAffx.23187.1.S1_at5/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600OsAffx.9949.1.S1_at4/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600Os.1288.1.S1_at4/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10610Os.1302.1.S1_at11/111+5665791..5668272BES1/BZR1 homolog protein 4, putative, expressed
LOC_Os01g10630Os.54635.1.S1_at11/111+5672471..5676353H+-ATPase FO-part b-subunit, putative, expressed
LOC_Os01g10630Os.5956.1.S1_at11/111+5672471..5676353H+-ATPase FO-part b-subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0009910biological_processnegative regulation of flower development
GO:0009911biological_processpositive regulation of flower development
GO:0005515molecular_functionprotein binding
GO:0008429molecular_functionphosphatidylethanolamine binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23189.1.S1_s_at--109--8631Chr01:5649441..5649465 (25 bp)
TGGTGGACCTGTTCTCGCCGGAGGT
LOC_Os01g10590
OsAffx.23189.1.S1_s_at--682--7371Chr01:5649464..5649488 (25 bp)
GTGACGCTCCGGGTGATGTACAACG
LOC_Os01g10590
OsAffx.23189.1.S1_s_at--119--5811Chr01:5649466..5649490 (25 bp)
GACGCTCCGGGTGATGTACAACGGC
LOC_Os01g10590
OsAffx.23189.1.S1_s_at--980--4131Chr01:5649468..5649492 (25 bp)
CGCTCCGGGTGATGTACAACGGCGT
LOC_Os01g10590
OsAffx.23189.1.S1_s_at--31--751Chr01:5649479..5649503 (25 bp)
ATGTACAACGGCGTGCGGGTCGTCA
LOC_Os01g10590
OsAffx.23189.1.S1_s_at--45--8751Chr01:5649480..5649504 (25 bp)
TGTACAACGGCGTGCGGGTCGTCAA
LOC_Os01g10590
OsAffx.23189.1.S1_s_at--731--7031Chr01:5649481..5649505 (25 bp)
GTACAACGGCGTGCGGGTCGTCAAC
LOC_Os01g10590
OsAffx.23189.1.S1_s_at--704--1931Chr01:5649486..5649510 (25 bp)
ACGGCGTGCGGGTCGTCAACGGCGA
LOC_Os01g10590
OsAffx.23189.1.S1_s_at--188--7511Chr01:5651948..5651972 (25 bp)
GGGATCCACCGGGTGGCGGTGGTGC
LOC_Os01g10590
OsAffx.23189.1.S1_s_at--341--3871Chr01:5651972..5651996 (25 bp)
CTGTTCCGGCAGATGGCGCGCGGCG
LOC_Os01g10590
OsAffx.23189.1.S1_s_at--877--1751Chr01:5652092..5652116 (25 bp)
ACCTGCAAGCCCGAGGGCGGCACCG
LOC_Os01g10590
Target Sequence 
TGGTGGACCTGTTCTCGCCGGAGGTGACGCTCCGGGTGATGTACAACGGCGTGCGGGTCGTCAACGGCGAGGACCTCCGG
CCGTCGGCGGTGTCGGCGAGGCCCAGCGTCGAGGTCGGAGGGGATCTCCACCAGTTCTACACGATCGTCAGGCGCGAGGT
GGTGTGCTACGAGAGCCCCCGGCCAGCGGCGGGGATCCACCGGGTGGCGGTGGTGCTGTTCCGGCAGATGGCGCGCGGCG
GCGTGGACCAGCCGCCGCTGCTCCGCCACAACTTCTCCACCCGCGGCTTCGCCGACGACCACGCCCTCGGCGCCCCCGTC
GCCGCCGCCTTCTTCACCTGCAAGCCCGAGGGCGGCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23189.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis