Browse Element(s) Details


OsAffx.23265.1.S1_at

Description tigr:9629.m01587
TID=OsAffx.23265.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1596011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15910OsAffx.11069.1.S1_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15910OsAffx.11069.4.S1_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15910OsAffx.11069.1.S1_x_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15920NANA1+8965529..8965735hypothetical protein
LOC_Os01g15934NANA1+8970406..8974984retrotransposon, putative, centromere-specific
LOC_Os01g15950NANA1+8975807..8976082expressed protein
LOC_Os01g15960OsAffx.23265.1.S1_at11/111+8980566..8980895hypothetical protein
LOC_Os01g15970Os.4750.1.S1_x_at11/111+8983055..8984199expressed protein
LOC_Os01g15970Os.55385.1.S1_at11/111+8983055..8984199expressed protein
LOC_Os01g15979Os.94.1.S1_at11/111+8985713..8989380gb protein, putative, expressed
LOC_Os01g15990OsAffx.22206.1.S1_at11/111+8992117..8993694expressed protein
LOC_Os01g15990OsAffx.27180.1.S1_x_at1/111+8992117..8993694expressed protein
LOC_Os01g16000Os.96.1.S1_at9/111+9001392..9004857SEC14 cytosolic factor family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23265.1.S1_at--107--6651Chr01:8980629..8980653 (25 bp)
GTTGATTTTAATCCGGTGGTGACAT
LOC_Os01g15960
OsAffx.23265.1.S1_at--841--8591Chr01:8980645..8980669 (25 bp)
TGGTGACATCAGTTGCAAACCGGAC
LOC_Os01g15960
OsAffx.23265.1.S1_at--20--2371Chr01:8980661..8980685 (25 bp)
AAACCGGACTAAAGCTATCACTGTG
LOC_Os01g15960
OsAffx.23265.1.S1_at--129--10171Chr01:8980676..8980700 (25 bp)
TATCACTGTGGGTGAACTCTTTGCT
LOC_Os01g15960
OsAffx.23265.1.S1_at--643--5471Chr01:8980689..8980713 (25 bp)
GAACTCTTTGCTCGACTTGTTAGCT
LOC_Os01g15960
OsAffx.23265.1.S1_at--159--5691Chr01:8980702..8980726 (25 bp)
GACTTGTTAGCTTTGAGACTCGTAT
LOC_Os01g15960
OsAffx.23265.1.S1_at--1060--1991Chr01:8980719..8980743 (25 bp)
ACTCGTATGGAGTCGTGGAGGCTTT
LOC_Os01g15960
OsAffx.23265.1.S1_at--925--3672Chr01:8980740..8980764 (25 bp)
CTTTCGACCGCAGGCAAGGTGGTGA
LOC_Os01g15960
OsAffx.23265.1.S1_at--207--7191Chr01:8980779..8980803 (25 bp)
GTCGGCGCGACAATAACATTCATCC
LOC_Os01g15960
OsAffx.23265.1.S1_at--219--1271Chr01:8980827..8980851 (25 bp)
AGATTTGTCATTATAATTGCTTCCA
LOC_Os01g15960
OsAffx.23265.1.S1_at--262--3172Chr01:8980841..8980865 (25 bp)
AATTGCTTCCAAATTATTTCTCCTT
LOC_Os01g15960
Target Sequence 
GTTGATTTTAATCCGGTGGTGACATCAGTTGCAAACCGGACTAAAGCTATCACTGTGGGTGAACTCTTTGCTCGACTTGT
TAGCTTTGAGACTCGTATGGAGTCGTGGAGGCTTTCGACCGCAGGCAAGGTGGTGACTGCGGCCGCGGACGTCGGCGCGA
CAATAACATTCATCCCATGGAAACAAATATTAATTGTTAGATTTGTCATTATAATTGCTTCCAAATTATTTCTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23265.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis