Browse Element(s) Details


OsAffx.23309.2.S1_x_at

Description tigr:9629.m01936
TID=OsAffx.23309.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g148901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14830OsAffx.13878.1.S1_at2/116+8430065..8431051hypothetical protein
LOC_Os06g14840OsAffx.29313.1.S1_at1/116+8433868..8435394transposon protein, putative, Mutator sub-class
LOC_Os06g14850NANA6+8443359..8445473SWIM zinc finger family protein
LOC_Os06g14860NANA6+8446689..8448279hypothetical protein
LOC_Os06g14870Os.53606.1.S1_at11/116+8452430..8453088expressed protein
LOC_Os06g14879NANA6+8454482..8454726NA
LOC_Os06g14890OsAffx.4841.1.S1_at10/116+8455826..8456919hypothetical protein
LOC_Os06g14890OsAffx.23309.2.S1_x_at1/116+8455826..8456919hypothetical protein
LOC_Os06g14890OsAffx.20017.1.S1_at1/116+8455826..8456919hypothetical protein
LOC_Os06g14900NANA6+8462150..8463030retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g14910NANA6+8463877..8465737retrotransposon protein, putative, unclassified
LOC_Os06g14920NANA6+8467007..8470274retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g14930NANA6+8471698..8472129transposon protein, putative, unclassified
LOC_Os06g14940NANA6+8481199..8482624hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23309.2.S1_x_at--855--3231Chr01:11238673..11238697 (25 bp)
CAACCGGACTAGGTTGGCGGCAAGA
NONE
OsAffx.23309.2.S1_x_at--883--9251Chr01:11238610..11238634 (25 bp)
TCCTCATGGGTTGCGGGCAGGCAGA
NONE
OsAffx.23309.2.S1_x_at--1097--7911Chr01:11238504..11238528 (25 bp)
GGATTCGCTCTCACTGACGGTGGCC
NONE
OsAffx.23309.2.S1_x_at--1051--8411NONE
GGCCGTGGACGGGATCAAACCATCT
NONE
OsAffx.23309.2.S1_x_at--199--4491NONE
GCCGTGGACGGGATCAAACCATCTG
NONE
OsAffx.23309.2.S1_x_at--780--81111Chr11:15926491..15926510 (20 bp)
GGACGGGATCAAACCATCTGGCACG
NONE
OsAffx.23309.2.S1_x_at--1071--7953Chr07:15844461..15844481 (21 bp)
GGATCAAACCATCTGGCACGCTTAG
NONE
OsAffx.23309.2.S1_x_at--601--5072Chr12:7981620..7981661 (25 bp)
GCACGCTTAGAACCCGAAGGCAATT
NONE
OsAffx.23309.2.S1_x_at--459--3332Chr12:7981621..7981661 (24 bp)
CACGCTTAGAACCCGAAGGCAATTT
NONE
OsAffx.23309.2.S1_x_at--413--5191Chr01:11236576..11236600 (25 bp)
GCAATTTTCCCGGACCTGCACTGGA
NONE
OsAffx.23309.2.S1_x_at--154--3191Chr01:11236575..11236599 (25 bp)
CAATTTTCCCGGACCTGCACTGGAG
NONE
Target Sequence 
CAACCGGACTAGGTTGGCGGCAAGAAGGGCGCCAAGGGCCAGGAGCCGCTCTCCTCCTCCTCCTCCTCATGGGTTGCGGG
CAGGCAGATGCCGGCGGCGGCCTCGGTGGGGAGCCGCTCTCGCTGACGGTGGCCGTGGGAAGGGAGATTTCGGCGGCGGC
CCTCGGCGGGGATTCGCTCTCACTGACGGTGGCCGTGGACGGGATCAAACCATCTGGCACGCTTAGAACCCGAAGGCAAT
TTTCCCGGACCTGCACTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23309.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis