Browse Element(s) Details


OsAffx.23321.1.S1_at

Description tigr:9629.m02039
TID=OsAffx.23321.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2134011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21300Os.57035.1.S1_at11/111+11880039..11884875Phospholipase, putative, expressed
LOC_Os01g21310Os.45878.1.S1_at11/111+11887890..11889916esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g21320Os.5892.1.S1_s_at11/111+11889186..11891870UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g21320OsAffx.2049.2.S1_x_at6/111+11889186..11891870UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g21330NANA1+11892606..11893247hypothetical protein
LOC_Os01g21340OsAffx.23321.1.S1_at11/111+11899989..11900390hypothetical protein
LOC_Os01g21350NANA1+11912834..11914369hypothetical protein
LOC_Os01g21360NANA1+11916796..11919966retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g21370OsAffx.11142.1.S1_at11/111+11923420..11925417transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23321.1.S1_at--640--10791Chr01:11900310..11900334 (25 bp)
TTGTTCACCCTCGACCAGCAGTGGG
LOC_Os01g21340
OsAffx.23321.1.S1_at--752--4671Chr01:11900234..11900258 (25 bp)
GCGGAAGCTAGCTGGAGTGGGTTCT
LOC_Os01g21340
OsAffx.23321.1.S1_at--165--7731Chr01:11900183..11900207 (25 bp)
GGTGGCGCAAGGAGCTCATCCCCCG
LOC_Os01g21340
OsAffx.23321.1.S1_at--1047--5131Chr01:11900177..11900201 (25 bp)
GCAAGGAGCTCATCCCCCGGGTCGA
LOC_Os01g21340
OsAffx.23321.1.S1_at--580--9371Chr01:11900077..11900101 (25 bp)
TCGACGATGGCAAGGCTAACACTCG
LOC_Os01g21340
OsAffx.23321.1.S1_at--443--1871Chr01:11900074..11900098 (25 bp)
ACGATGGCAAGGCTAACACTCGGCG
LOC_Os01g21340
OsAffx.23321.1.S1_at--13--4071Chr01:11900073..11900097 (25 bp)
CGATGGCAAGGCTAACACTCGGCGA
LOC_Os01g21340
OsAffx.23321.1.S1_at--890--6231Chr01:11900072..11900096 (25 bp)
GATGGCAAGGCTAACACTCGGCGAG
LOC_Os01g21340
OsAffx.23321.1.S1_at--595--851Chr01:11900071..11900095 (25 bp)
ATGGCAAGGCTAACACTCGGCGAGA
LOC_Os01g21340
OsAffx.23321.1.S1_at--473--8511Chr01:11900070..11900094 (25 bp)
TGGCAAGGCTAACACTCGGCGAGAT
LOC_Os01g21340
OsAffx.23321.1.S1_at--1140--8211Chr01:11900069..11900093 (25 bp)
GGCAAGGCTAACACTCGGCGAGATG
LOC_Os01g21340
Target Sequence 
TTGTTCACCCTCGACCAGCAGTGGGGCATGGGCCGCGGTGTGGTGGCCGCCGGCGGGAGCTGAAGCGGCGGCGGCAGCGG
AAGCTAGCTGGAGTGGGTTCTGGAGCACCGCCGGCATGGTGGACGGAGGTGGCGCAAGGAGCTCATCCCCCGGGTCGACG
GCGACGGACCTCGGCGCGACAAAGAGGCGGTCGCCCCCCTCCGACGGTGGCGGCGGTCCCCGGAGTGGAGGAGTCGACGA
TGGCAAGGCTAACACTCGGCGAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis