Browse Element(s) Details


Os.5892.1.S1_s_at

Description gb:AB167396.1
DB_XREF= gi:45421831
GEN=UXS-2
TID=Os.5892.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5892 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) UXS-2 mRNA for UDP-glucuronic acid decarboxylase, complete cds.
PROD=UDP-glucuronic acid decarboxylase
FL= gb:AK061857.1 gb:AB167396.1 gb:AK101168.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2132011/11UDP-D-glucuronate decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21280Os.17805.1.S3_s_at11/111+11865489..11867693hypothetical protein
LOC_Os01g21290Os.40360.1.S1_at9/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40855.5.S1_x_at8/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40855.2.S1_x_at8/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40360.1.S1_x_at6/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40855.4.S1_x_at3/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40855.4.S1_at1/111+11869336..11872539hypothetical protein
LOC_Os01g21300Os.57035.1.S1_at11/111+11880039..11884875Phospholipase, putative, expressed
LOC_Os01g21310Os.45878.1.S1_at11/111+11887890..11889916esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g21320Os.5892.1.S1_s_at11/111+11889186..11891870UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g21320OsAffx.2049.2.S1_x_at6/111+11889186..11891870UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g21330NANA1+11892606..11893247hypothetical protein
LOC_Os01g21340OsAffx.23321.1.S1_at11/111+11899989..11900390hypothetical protein
LOC_Os01g21350NANA1+11912834..11914369hypothetical protein
LOC_Os01g21360NANA1+11916796..11919966retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009225biological_processnucleotide-sugar metabolism
GO:0019305biological_processdTDP-rhamnose biosynthesis
GO:0042732biological_processD-xylose metabolism
GO:0000139cellular_componentGolgi membrane
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
GO:0008460molecular_functiondTDP-glucose 4,6-dehydratase activity
GO:0048040molecular_functionUDP-glucuronate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5892.1.S1_s_at--208--6171Chr01:11890669..11890693 (25 bp)
GAGGATTGCTCGGATTTTTAACACA
LOC_Os01g21320
Os.5892.1.S1_s_at--356--10371Chr01:11890654..11890678 (25 bp)
TTTTAACACATATGGTCCTCGCATG
LOC_Os01g21320
Os.5892.1.S1_s_at--1043--8191Chr01:11890479..11890503 (25 bp)
GGAAGGAACCTTTGACTGTCTATGG
LOC_Os01g21320
Os.5892.1.S1_s_at--1074--8931Chr01:11890467..11890491 (25 bp)
TGACTGTCTATGGTGATGGCAAGCA
LOC_Os01g21320
Os.5892.1.S1_s_at--1093--5911Chr01:11890436..11890460 (25 bp)
GAGCTTTCAATATGTCTCTGATTTG
LOC_Os01g21320
Os.5892.1.S1_s_at--630--5111Chr01:11889971..11889995 (25 bp)
GCACATAGGACCATTTAACCTGGGT
LOC_Os01g21320
Os.5892.1.S1_s_at--1137--5631Chr01:11889901..11889925 (25 bp)
GACACCATTGATCCGAATGCTCGCA
LOC_Os01g21320
Os.5892.1.S1_s_at--326--3011Chr01:11889886..11889910 (25 bp)
AATGCTCGCATTGAGTTCCGTCCGA
LOC_Os01g21320
Os.5892.1.S1_s_at--620--7991Chr01:11889854..11889878 (25 bp)
GGATGATCCACACAAGCGCAAGCCT
LOC_Os01g21320
Os.5892.1.S1_s_at--782--8951Chr01:11889830..11889854 (25 bp)
TGACATCACCCGTGCGAAAGAGCTC
LOC_Os01g21320
Os.5892.1.S1_s_at--1122--5131Chr01:11889744..11889768 (25 bp)
GCAAACGCATCTTTGGCGACCAGGA
LOC_Os01g21320
Target Sequence 
GAGGATTGCTCGGATTTTTAACACATATGGTCCTCGCATGTGCATTGATGATGGCCGTGTTGTCAGCAACTTTGTTGCTC
AGGCACTGAGGAAGGAACCTTTGACTGTCTATGGTGATGGCAAGCAGACTAGGAGCTTTCAATATGTCTCTGATTTGGTG
GAAGGGTTGATGAGCTTGATGGAAGGGGAGCACATAGGACCATTTAACCTGGGTAATCCGGGTGAGTTCACCATGCTGGA
GCTGGCTAAGGTTGTCCAGGACACCATTGATCCGAATGCTCGCATTGAGTTCCGTCCGAACACTGCGGATGATCCACACA
AGCGCAAGCCTGACATCACCCGTGCGAAAGAGCTCCTGGGCTGGGAGCCCAAGGTTCCCCTGCGTGAGGGCCTTCCCCTC
ATGGTTACCGACTTCCGCAAACGCATCTTTGGCGACCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5892.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis