Browse Element(s) Details


OsAffx.2049.2.S1_x_at

Description tigr:9629.m02036
TID=OsAffx.2049.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=dTDP-glucose 4-6-dehydratase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g213206/11UDP-D-glucuronate decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21280Os.17805.1.S3_s_at11/111+11865489..11867693hypothetical protein
LOC_Os01g21290Os.40360.1.S1_at9/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40855.5.S1_x_at8/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40855.2.S1_x_at8/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40360.1.S1_x_at6/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40855.4.S1_x_at3/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40855.4.S1_at1/111+11869336..11872539hypothetical protein
LOC_Os01g21300Os.57035.1.S1_at11/111+11880039..11884875Phospholipase, putative, expressed
LOC_Os01g21310Os.45878.1.S1_at11/111+11887890..11889916esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g21320Os.5892.1.S1_s_at11/111+11889186..11891870UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g21320OsAffx.2049.2.S1_x_at6/111+11889186..11891870UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g21330NANA1+11892606..11893247hypothetical protein
LOC_Os01g21340OsAffx.23321.1.S1_at11/111+11899989..11900390hypothetical protein
LOC_Os01g21350NANA1+11912834..11914369hypothetical protein
LOC_Os01g21360NANA1+11916796..11919966retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009225biological_processnucleotide-sugar metabolism
GO:0019305biological_processdTDP-rhamnose biosynthesis
GO:0042732biological_processD-xylose metabolism
GO:0000139cellular_componentGolgi membrane
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
GO:0008460molecular_functiondTDP-glucose 4,6-dehydratase activity
GO:0048040molecular_functionUDP-glucuronate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2049.2.S1_x_at--39--1971Chr01:11889448..11889472 (25 bp)
ACTGTCTTTTTTGGTCTTGCTCATA
LOC_Os01g21320
OsAffx.2049.2.S1_x_at--518--5491Chr01:11889359..11889383 (25 bp)
GAACATTCCACTTGCTTACATGAAG
LOC_Os01g21320
OsAffx.2049.2.S1_x_at--56--9891Chr01:11889260..11889284 (25 bp)
TACTTGGCAAGTTGGCATATGTCTT
LOC_Os01g21320
OsAffx.2049.2.S1_x_at--1121--7131Chr01:11889240..11889264 (25 bp)
GTCTTGACTCTTAACACCTCTATAA
LOC_Os01g21320
OsAffx.2049.2.S1_x_at--645--2171Chr01:11889214..11889238 (25 bp)
ACACGAAGTCATGCACACTGTGCCA
LOC_Os01g21320
OsAffx.2049.2.S1_x_at--76--1971Chr01:11889198..11889222 (25 bp)
ACTGTGCCACTTATTGACCATTCTA
LOC_Os01g21320
OsAffx.2049.2.S1_x_at--1131--5831Chr01:11889183..11889207 (25 bp)
GACCATTCTAGGCAGGCTGGAGCCT
NONE
OsAffx.2049.2.S1_x_at--1055--4711Chr01:11889168..11889192 (25 bp)
GCTGGAGCCTCTAATCTTTACATTG
NONE
OsAffx.2049.2.S1_x_at--514--3291Chr01:11889140..11889164 (25 bp)
CAAAGCTACATTTCCGAGTGGTGAT
NONE
OsAffx.2049.2.S1_x_at--39--7991Chr01:11889016..11889040 (25 bp)
GGATGAACCTGTCCGGCGACGCCAT
NONE
OsAffx.2049.2.S1_x_at--25--5811Chr01:11888999..11889023 (25 bp)
GACGCCATCATCTTCATCAGGCGGT
NONE
Target Sequence 
ACTGTCTTTTTTGGTCTTGCTCATAGAAGCCATATGGTGTTATACATGTAATCTTTATTGGAAACTCGATATATGTTTCA
GTATGAACAGAACATTCCACTTGCTTACATGAAGCATCTTTTTAAACTTTTTTTTGACCAAATTTGCACTGGATTGGAGG
AAAAGGAATGGTTTGTGATACATTACATTACTTGGCAAGTTGGCATATGTCTTGACTCTTAACACCTCTATAATACACGA
AGTCATGCACACTGTGCCACTTATTGACCATTCTAGGCAGGCTGGAGCCTCTAATCTTTACATTGTTACAAAGCTACATT
TCCGAGTGGTGATGCGTTCGGCCGGCGAGCCCGGAGAAGCAGCCGCCGCGCCGCCGTGGAGGGCCGCGCTTGGCGTCACC
GTCGACGTCAGCGGCGCCGCCCCTCTCGCCGCGGATGAACCTGTCCGGCGACGCCATCATCTTCATCAGGCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2049.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis