Browse Element(s) Details


OsAffx.23399.1.S1_at

Description tigr:9629.m02525
TID=OsAffx.23399.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Acyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2600010/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25950Os.53142.1.S1_at3/111+14698069..14700868retrotransposon protein, putative, unclassified
LOC_Os01g25960OsAffx.27924.1.S1_at2/111+14703918..14707124retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25960OsAffx.26951.1.S1_at1/111+14703918..14707124retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25970NANA1+14708286..14709464retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25980NANA1+14711545..14712117retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25990Os.5375.1.S1_at11/111+14712629..14720895esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g25990OsAffx.31138.1.S1_x_at2/111+14712629..14720895esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g25990Os.54405.1.S1_at1/111+14712629..14720895esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g26000OsAffx.23399.1.S1_at10/111+14725434..14730633hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g26010OsAffx.23400.1.S1_at11/111+14731883..14732571hypothetical protein
LOC_Os01g26020Os.18293.1.S1_at9/111+14734782..14737053expressed protein
LOC_Os01g26039Os.17002.1.S1_at11/111+14737314..14746988esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g26060OsAffx.23402.1.S1_at10/111+14749764..14751621hypothetical protein
LOC_Os01g26070Os.51354.1.S1_at11/111+14751752..14752362expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23399.1.S1_at--1019--6191NONE
GAGGCACTCCACTGCAAGGGTGAAG
NONE
OsAffx.23399.1.S1_at--102--1371Chr01:14726118..14726142 (25 bp)
AGAGCACAGACTGTTCTGGCCAGAC
LOC_Os01g26000
OsAffx.23399.1.S1_at--428--3591Chr01:14726052..14726076 (25 bp)
CATTGTGCCCTTCGGAGTCGTCGGA
LOC_Os01g26000
OsAffx.23399.1.S1_at--1139--5771Chr01:14725970..14726048 (25 bp)
GACGACCTAATGGAACTGCTCTGCA
LOC_Os01g26000
OsAffx.23399.1.S1_at--1099--3831Chr01:14725876..14725900 (25 bp)
CTGCTCTGCACTTTCGAGGACATTA
LOC_Os01g26000
OsAffx.23399.1.S1_at--617--951Chr01:14725860..14725884 (25 bp)
AGGACATTAGGAACGCACCCTTCGG
LOC_Os01g26000
OsAffx.23399.1.S1_at--980--5151Chr01:14725823..14725847 (25 bp)
GCAAGCATACAGCAACCATCTCAAG
LOC_Os01g26000
OsAffx.23399.1.S1_at--764--6891Chr01:14725659..14725683 (25 bp)
GTATCTGAAGATCCCGGGCAGGTTC
LOC_Os01g26000
OsAffx.23399.1.S1_at--314--9731Chr01:14725546..14725570 (25 bp)
TCAAGTCGGAGGTCAAGGCCATGAT
LOC_Os01g26000
OsAffx.23399.1.S1_at--590--711Chr01:14725526..14725550 (25 bp)
ATGATCGCCTACCTGCTGGAGAAGA
LOC_Os01g26000
OsAffx.23399.1.S1_at--1132--4331Chr01:14725471..14725495 (25 bp)
CCAGGATTCTGTACCAGCTTGGTTG
LOC_Os01g26000
Target Sequence 
GAGGCACTCCACTGCAAGGGTGAAGAGCACAGACTGTTCTGGCCAGACCAGACTGAATTTGTGAGGATGGCAGCGCAGTT
CAACGCCACCATTGTGCCCTTCGGAGTCGTCGGAGAGGACGACCTAATGGAACTGCTCTGCACTTTCGAGGACATTAGGA
ACGCACCCTTCGGCAAGGAGATCATGCAAGCATACAGCAACCATCTCAAGCTAAGGGACATCGACCACGAGGTGTTCTTC
CCGGGGGTGTATCTGAAGATCCCGGGCAGGTTCTACTACCGGTTCGGGAAGCCGATCCCGACGAAGGGGATGCAGGCCGT
GATGACGGACAAGCAGGCCGCCGGCGAGCTCTACCTGCACGTCAAGTCGGAGGTCAAGGCCATGATCGCCTACCTGCTGG
AGAAGAGGGAGGAGGACAAGTTCAGGAGCATCCTCCCCAGGATTCTGTACCAGCTTGGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis