Browse Element(s) Details


OsAffx.23400.1.S1_at

Description tigr:9629.m02526
TID=OsAffx.23400.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2601011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25960OsAffx.27924.1.S1_at2/111+14703918..14707124retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25960OsAffx.26951.1.S1_at1/111+14703918..14707124retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25970NANA1+14708286..14709464retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25980NANA1+14711545..14712117retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25990Os.5375.1.S1_at11/111+14712629..14720895esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g25990OsAffx.31138.1.S1_x_at2/111+14712629..14720895esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g25990Os.54405.1.S1_at1/111+14712629..14720895esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g26000OsAffx.23399.1.S1_at10/111+14725434..14730633hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g26010OsAffx.23400.1.S1_at11/111+14731883..14732571hypothetical protein
LOC_Os01g26020Os.18293.1.S1_at9/111+14734782..14737053expressed protein
LOC_Os01g26039Os.17002.1.S1_at11/111+14737314..14746988esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g26060OsAffx.23402.1.S1_at10/111+14749764..14751621hypothetical protein
LOC_Os01g26070Os.51354.1.S1_at11/111+14751752..14752362expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23400.1.S1_at--74--191Chr01:14731926..14731950 (25 bp)
ATTTATTTTCCTCCACGTGTCATGT
LOC_Os01g26010
OsAffx.23400.1.S1_at--429--8731Chr01:14731943..14732278 (25 bp)
TGTCATGTGAGCATCGTCGAGGAAC
LOC_Os01g26010
OsAffx.23400.1.S1_at--528--5971Chr01:14732301..14732325 (25 bp)
GAGAAGCATTGGTGGTGACCTCAGC
LOC_Os01g26010
OsAffx.23400.1.S1_at--60--7391Chr01:14732315..14732339 (25 bp)
GTGACCTCAGCGAAGATACCACCGG
LOC_Os01g26010
OsAffx.23400.1.S1_at--239--311Chr01:14732330..14732354 (25 bp)
ATACCACCGGCGAGGTCTATGACAT
LOC_Os01g26010
OsAffx.23400.1.S1_at--972--671Chr01:14732348..14732372 (25 bp)
ATGACATTGAGTACCGCTACAGCGA
LOC_Os01g26010
OsAffx.23400.1.S1_at--812--5171Chr01:14732405..14732429 (25 bp)
GCAAGGTCTACATCATTGGCGGCGA
LOC_Os01g26010
OsAffx.23400.1.S1_at--47--10871Chr01:14732420..14732444 (25 bp)
TTGGCGGCGATCTCAGCGAAGATAC
LOC_Os01g26010
OsAffx.23400.1.S1_at--648--5351Chr01:14732437..14732461 (25 bp)
GAAGATACAGCCAGCGAGGTCCGCG
LOC_Os01g26010
OsAffx.23400.1.S1_at--414--7251Chr01:14732455..14732479 (25 bp)
GTCCGCGGCATTAAGTATTTCTGCA
LOC_Os01g26010
OsAffx.23400.1.S1_at--172--4691Chr01:14732516..14732540 (25 bp)
GCGGCGGTGACCTAAACCCTAGCAT
LOC_Os01g26010
Target Sequence 
ATTTATTTTCCTCCACGTGTCATGTGAGCATCGTCGAGGAACGTGGCAAGGGTGGTGGTGGTGAGAGAAGCATTGGTGGT
GACCTCAGCGAAGATACCACCGGCGAGGTCTATGACATTGAGTACCGCTACAGCGAGAAGAGTGCTGCCAAGGAGAAGGG
TGGCAGCGGCAAGGTCTACATCATTGGCGGCGATCTCAGCGAAGATACAGCCAGCGAGGTCCGCGGCATTAAGTATTTCT
GCAGCGAGAAGAGTGCTGCCGAGGAATGTGGTAAGGGCGGCGGCGGTGACCTAAACCCTAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis