Browse Element(s) Details


OsAffx.23458.2.S1_at

Description tigr:9629.m02889
TID=OsAffx.23458.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3110011/11hypothetical protein
LOC_Os01g309901/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31050OsAffx.11261.1.S1_at11/111+17309014..17309853hypothetical protein
LOC_Os01g31070OsAffx.16343.1.S1_at1/111+17314501..17315839retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31080NANA1+17316231..17318848retrotransposon protein, putative, unclassified
LOC_Os01g31090NANA1+17325659..17326471hypothetical protein
LOC_Os01g31100OsAffx.23458.2.S1_at11/111+17332350..17333120hypothetical protein
LOC_Os01g31110Os.15474.1.S1_x_at11/111+17339517..17343168CRS2-associated factor 1, putative, expressed
LOC_Os01g31110Os.43143.1.S1_at11/111+17339517..17343168CRS2-associated factor 1, putative, expressed
LOC_Os01g31110Os.48257.1.A1_at11/111+17339517..17343168CRS2-associated factor 1, putative, expressed
LOC_Os01g31110OsAffx.31445.1.S1_x_at2/111+17339517..17343168CRS2-associated factor 1, putative, expressed
LOC_Os01g31120NANA1+17347843..17350482hypothetical protein
LOC_Os01g31124NANA1+17351577..17352478hypothetical protein
LOC_Os01g31130OsAffx.7695.1.S1_at2/111+17353329..17356260retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23458.2.S1_at--28--3731Chr01:17332556..17332580 (25 bp)
CTCAAAAATTTTCCCGATGGGCAAG
LOC_Os01g31100
OsAffx.23458.2.S1_at--416--1711Chr01:17332581..17332605 (25 bp)
ACCAACACTCCTCGTGGAAGAATAT
LOC_Os01g31100
OsAffx.23458.2.S1_at--684--1991Chr01:17332587..17332611 (25 bp)
ACTCCTCGTGGAAGAATATCTAGCT
LOC_Os01g31100
OsAffx.23458.2.S1_at--284--5591Chr01:17332650..17332791 (25 bp)
GAAATGCTGCAGGAACGGTCAGTGA
LOC_Os01g31100
OsAffx.23458.2.S1_at--750--2551Chr01:17332781..17332804 (24 bp)
AACGGTCAGTGATGCCAACCAACCT
LOC_Os01g31100
OsAffx.23458.2.S1_at--487--3491Chr01:17332868..17332892 (25 bp)
CATGTACACCGTCGAAGGGATGGAA
LOC_Os01g31100
OsAffx.23458.2.S1_at--215--2892Chr01:17332882..17332906 (25 bp)
AAGGGATGGAAATGCTCGCCGCCCA
LOC_Os01g31100
OsAffx.23458.2.S1_at--653--4171Chr01:17332949..17332973 (25 bp)
CGCCAAGCAGAGTGCCGTTAAGGCT
LOC_Os01g31100
OsAffx.23458.2.S1_at--387--6091Chr01:17332958..17332982 (25 bp)
GAGTGCCGTTAAGGCTTTGGGCTCT
LOC_Os01g31100
OsAffx.23458.2.S1_at--491--2932Chr03:6079953..6079976 (23 bp)
AAGGCTTTGGGCTCTCACATAACAT
NONE
OsAffx.23458.2.S1_at--94--4891Chr01:17332971..17332995 (25 bp)
GCTTTGGGCTCTCACATAACATGTG
LOC_Os01g31100
Target Sequence 
CTCAAAAATTTTCCCGATGGGCAAGACCAACACTCCTCGTGGAAGAATATCTAGCTTTCAGCAGATGAGGGATGAAACCA
TTCTTGAAGCTGGGGAAATGCTGCAGGAACGGTCAGTGATGCCAACCAACCTGATTGAGAAGATGGTCTCAAATATTGGT
TGGAGCAAGGAACGACTCCAAACCCGTCAACGCGGCATGTACACCGTCGAAGGGATGGAAATGCTCGCCGCCCAGTTGGA
TCTCCTTATGAAGAGACTGGACAACAATGAGAAGGACGCCAAGCAGAGTGCCGTTAAGGCTTTGGGCTCTCACATAACAT
GTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23458.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis