Browse Element(s) Details


OsAffx.23489.1.S1_at

Description tigr:9629.m03134
TID=OsAffx.23489.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3345010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33410Os.52853.1.S1_at11/111+18717069..18720977hAT family dimerisation domain containing protein, expressed
LOC_Os01g33420Os.27578.1.S1_at11/111+18721100..18728532glycosyl hydrolase family protein 27, putative, expressed
LOC_Os01g33430OsAffx.11301.1.S1_at11/111+18732198..18737254Leucine Rich Repeat family protein
LOC_Os01g33440OsAffx.673.1.S1_at11/111+18739470..18742196retrotransposon protein, putative, unclassified
LOC_Os01g33440OsAffx.673.1.S1_x_at11/111+18739470..18742196retrotransposon protein, putative, unclassified
LOC_Os01g33440OsAffx.17708.1.S1_at1/111+18739470..18742196retrotransposon protein, putative, unclassified
LOC_Os01g33450OsAffx.23489.1.S1_at10/111+18743766..18745290expressed protein
LOC_Os01g33460OsAffx.5954.5.S1_x_at6/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33460OsAffx.5954.1.S1_x_at4/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33460OsAffx.5954.3.S1_x_at3/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33470OsAffx.5954.4.S1_x_at2/111+18758807..18760302hypothetical protein
LOC_Os01g33480OsAffx.23491.1.S1_at11/111+18762557..18762961hypothetical protein
LOC_Os01g33490Os.53265.1.S1_at11/111+18765185..18766453F-box domain containing protein, expressed
LOC_Os01g33490OsAffx.8942.1.S1_x_at11/111+18765185..18766453F-box domain containing protein, expressed
LOC_Os01g33500NANA1+18768366..18768572hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23489.1.S1_at--1057--671Chr01:18743826..18743850 (25 bp)
ATGACGGTGTCGGTGGCATCCGCGG
LOC_Os01g33450
OsAffx.23489.1.S1_at--1002--10191Chr01:18743918..18743942 (25 bp)
TTTCTCAATCCCTCCGGTGGCGGTG
LOC_Os01g33450
OsAffx.23489.1.S1_at--41--5751Chr01:18744035..18744055 (21 bp)
GACGGCGTTGGTGGCTTCCCGATCT
LOC_Os01g33450
OsAffx.23489.1.S1_at--753--7491NONE
GTGGCTTCCCGATCTAGGGCTTCCG
NONE
OsAffx.23489.1.S1_at--305--6011Chr01:18744751..18744775 (25 bp)
GAGAGCTGCGCAGGGACGGCTGGAT
LOC_Os01g33450
OsAffx.23489.1.S1_at--1094--3891Chr01:18744770..18744794 (25 bp)
CTGGATCGGGCTGGCGGTCTTCTCC
LOC_Os01g33450
OsAffx.23489.1.S1_at--702--7711Chr01:18744809..18744833 (25 bp)
GGGTGTCGCCGGTCATCCAGCTCCG
LOC_Os01g33450
OsAffx.23489.1.S1_at--180--6571Chr01:18745186..18745210 (25 bp)
GATTCCGAGGTGAAAGTCGTGCTCT
LOC_Os01g33450
OsAffx.23489.1.S1_at--355--2331Chr01:18745198..18745222 (25 bp)
AAAGTCGTGCTCTGCTTGCTGGTGC
LOC_Os01g33450
OsAffx.23489.1.S1_at--167--9131Chr01:18745214..18745238 (25 bp)
TGCTGGTGCTAGCAATTGCGACGCC
LOC_Os01g33450
OsAffx.23489.1.S1_at--40--3171Chr01:18745227..18745251 (25 bp)
AATTGCGACGCCCTCGGGTGTCGTT
LOC_Os01g33450
Target Sequence 
ATGACGGTGTCGGTGGCATCCGCGGGTGGATCCGTCGGCCGTGGTGGCAACCGCGGGCGGATCTGGCAGCGGCGGCTCCC
TCCACCGCCTCTTTTCTCAATCCCTCCGGTGGCGGTGGTGGCGTCGGCGACGGCCGCGGATGGATCTGGCGGCGGTGGCG
ACGACCAAGGGGATCTGACGAGCGCCCCGTGGACGGATCCGGTGGTGGCGACGGCGTTGGTGGCTTCCCGATCTAGGGCT
TCCGGTGCCAAGAACTACTCCCCACTCGGCGGCGGCCTCCTCATCTCGGGCATGCAGCGAGAGCTGCGCAGGGACGGCTG
GATCGGGCTGGCGGTCTTCTCCTCCGGGCGGATCTGGGGTGTCGCCGGTCATCCAGCTCCGGCGGCCTGCCTCACCGCGT
CCGGCGCTGGCCCTCCCATCCCGGGGGATTCCGAGGTGAAAGTCGTGCTCTGCTTGCTGGTGCTAGCAATTGCGACGCCC
TCGGGTGTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23489.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis