Browse Element(s) Details


OsAffx.23526.1.S1_at

Description tigr:9629.m03387
TID=OsAffx.23526.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g359509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35890OsAffx.8275.1.S1_at1/111+20195994..20197161retrotransposon protein, putative, unclassified
LOC_Os01g35910NANA1+20201667..20201900hypothetical protein
LOC_Os01g35920NANA1+20202956..20206158hypothetical protein
LOC_Os01g35930Os.38208.1.S1_at11/111+20211101..20213199hypothetical protein
LOC_Os01g35930OsAffx.21261.1.S1_x_at10/111+20211101..20213199hypothetical protein
LOC_Os01g35930OsAffx.21261.2.S1_at10/111+20211101..20213199hypothetical protein
LOC_Os01g35930OsAffx.21261.1.S1_at9/111+20211101..20213199hypothetical protein
LOC_Os01g35950OsAffx.23526.1.S1_at9/111+20220487..20221594hypothetical protein
LOC_Os01g35960OsAffx.11342.1.S1_at11/111+20223152..20226101hypothetical protein
LOC_Os01g35970Os.52242.1.S1_at3/111+20230034..20233244transposon protein, putative, Mariner sub-class
LOC_Os01g35970OsAffx.2708.1.S1_x_at1/111+20230034..20233244transposon protein, putative, Mariner sub-class
LOC_Os01g35980Os.40988.1.S1_at11/111+20233891..20236248hypothetical protein
LOC_Os01g35990Os.34335.1.S1_x_at6/111+20238088..20241107expressed protein
LOC_Os01g35990Os.34335.1.S1_at4/111+20238088..20241107expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23526.1.S1_at--241--3471Chr01:20220503..20220527 (25 bp)
CAGTGGGTGGTGAATCGTGGCGTGA
LOC_Os01g35950
OsAffx.23526.1.S1_at--374--7191NONE
GTCGGAGGAGATCACACCATATTAT
NONE
OsAffx.23526.1.S1_at--413--231Chr01:20221035..20221059 (25 bp)
ATATTATTGAATGTGACGACGCCGA
LOC_Os01g35950
OsAffx.23526.1.S1_at--1085--1851Chr01:20221050..20221074 (25 bp)
ACGACGCCGAATATTGGCACCATAT
LOC_Os01g35950
OsAffx.23526.1.S1_at--367--4511Chr01:20221055..20221079 (25 bp)
GCCGAATATTGGCACCATATTAAAA
LOC_Os01g35950
OsAffx.23526.1.S1_at--242--1331NONE
AGAGGGTACATGTCAGAGGCAGCCA
NONE
OsAffx.23526.1.S1_at--8--7851Chr01:20221494..20221518 (25 bp)
GGTACATGTCAGAGGCAGCCAGCAG
LOC_Os01g35950
OsAffx.23526.1.S1_at--905--4351Chr01:20221512..20221536 (25 bp)
CCAGCAGCAAGCATGTGATGGAGAA
LOC_Os01g35950
OsAffx.23526.1.S1_at--1104--4951Chr01:20221522..20221546 (25 bp)
GCATGTGATGGAGAACACCGGCTAC
LOC_Os01g35950
OsAffx.23526.1.S1_at--1134--6471Chr01:20221531..20221555 (25 bp)
GGAGAACACCGGCTACGAAGAACGT
LOC_Os01g35950
OsAffx.23526.1.S1_at--383--2171Chr01:20221536..20221560 (25 bp)
ACACCGGCTACGAAGAACGTGAATT
LOC_Os01g35950
Target Sequence 
CAGTGGGTGGTGAATCGTGGCGTGAGTACGGATCGGAGGCGGAGGCGGAGGCGGTTGGTTGTCGGAGGAGATCACACCAT
ATTATTGAATGTGACGACGCCGAATATTGGCACCATATTAAAATTGAAAGATCGACGGCGTCGGGGACATATGGGAAGAG
AGGGTACATGTCAGAGGCAGCCAGCAGCAAGCATGTGATGGAGAACACCGGCTACGAAGAACGTGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23526.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis