Browse Element(s) Details


OsAffx.23542.1.S1_at

Description tigr:9629.m03550
TID=OsAffx.23542.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3750010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37449NANA1+21253625..21254561NA
LOC_Os01g37460Os.28649.1.S1_at11/111+21262636..21264288Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os01g37470Os.52498.1.S1_at11/111+21265187..21268127expressed protein
LOC_Os01g37480Os.23997.1.S1_at11/111+21269150..21272577expressed protein
LOC_Os01g37480Os.57362.1.S1_at2/111+21269150..21272577expressed protein
LOC_Os01g37490Os.18566.1.S1_at11/111+21277260..21278788dynein light chain, putative, expressed
LOC_Os01g37500OsAffx.23542.1.S1_at10/111+21278933..21280143hypothetical protein
LOC_Os01g37510Os.14593.1.S1_at11/111+21280808..21282357Peptide deformylase, mitochondrial precursor, putative, expressed
LOC_Os01g37520OsAffx.8983.2.S1_at11/111+21284258..21284866hypothetical protein
LOC_Os01g37530OsAffx.2177.1.S1_at11/111+21287471..21287716hypothetical protein
LOC_Os01g37530OsAffx.31891.1.S1_x_at1/111+21287471..21287716hypothetical protein
LOC_Os01g37540NANA1+21291447..21297602transposon protein, putative, unclassified
LOC_Os01g37550NANA1+21298234..21301476transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23542.1.S1_at--385--9731Chr01:21278964..21278988 (25 bp)
TCAAGTACTCGACCACCTCACTGTG
LOC_Os01g37500
OsAffx.23542.1.S1_at--244--5071Chr01:21278988..21279012 (25 bp)
GCAGCTCAGGTTCTATATTTTGGAT
LOC_Os01g37500
OsAffx.23542.1.S1_at--1155--10231Chr01:21279006..21279030 (25 bp)
TTTGGATGTCAGTAGGACCAGCCTA
LOC_Os01g37500
OsAffx.23542.1.S1_at--737--10091Chr01:21279018..21279042 (25 bp)
TAGGACCAGCCTATGTGAGAGTTCT
LOC_Os01g37500
OsAffx.23542.1.S1_at--174--7391Chr01:21279032..21279056 (25 bp)
GTGAGAGTTCTGACAAATGTTCCAT
LOC_Os01g37500
OsAffx.23542.1.S1_at--401--2291Chr01:21279046..21279070 (25 bp)
AAATGTTCCATTTTCCATGACAAGC
LOC_Os01g37500
OsAffx.23542.1.S1_at--696--671Chr01:21279062..21279083 (22 bp)
ATGACAAGCTCCTTCAGCCCAGTGG
LOC_Os01g37500
OsAffx.23542.1.S1_at--967--10511NONE
TTCAGCCCAGTGGTCTACAATTTGG
NONE
OsAffx.23542.1.S1_at--1087--7131Chr01:21279756..21279780 (25 bp)
GTCTACAATTTGGTGCCTCTGAAAC
LOC_Os01g37500
OsAffx.23542.1.S1_at--172--2411Chr01:21279777..21279801 (25 bp)
AAACAAGTGAACCTTCATCTCCCAG
LOC_Os01g37500
OsAffx.23542.1.S1_at--474--8971Chr01:21279784..21279808 (25 bp)
TGAACCTTCATCTCCCAGAATCAGA
LOC_Os01g37500
Target Sequence 
TCAAGTACTCGACCACCTCACTGTGCAGCTCAGGTTCTATATTTTGGATGTCAGTAGGACCAGCCTATGTGAGAGTTCTG
ACAAATGTTCCATTTTCCATGACAAGCTCCTTCAGCCCAGTGGTCTACAATTTGGTGCCTCTGAAACAAGTGAACCTTCA
TCTCCCAGAATCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis