Browse Element(s) Details


OsAffx.23546.1.S1_at

Description tigr:9629.m03583
TID=OsAffx.23546.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3781011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37770Os.49606.1.S1_at11/111+21451791..21455204RWD domain containing protein, expressed
LOC_Os01g37770Os.22790.1.A1_x_at11/111+21451791..21455204RWD domain containing protein, expressed
LOC_Os01g37780OsAffx.8975.1.S1_at11/111+21461764..21463263hypothetical protein
LOC_Os01g37790Os.20002.1.S1_at11/111+21465717..21469941expressed protein
LOC_Os01g37800Os.6802.1.S1_at11/111+21470348..21473223Ras-related protein RIC1, putative, expressed
LOC_Os01g37800Os.57451.1.S1_x_at3/111+21470348..21473223Ras-related protein RIC1, putative, expressed
LOC_Os01g37810OsAffx.23546.1.S1_at11/111+21477308..21477697expressed protein
LOC_Os01g37820Os.38090.2.S1_x_at11/111+21478387..21482486expressed protein
LOC_Os01g37820Os.38090.1.S1_at11/111+21478387..21482486expressed protein
LOC_Os01g37825Os.6069.1.S1_at11/111+21488749..21494266peptidase M16 family protein, putative, expressed
LOC_Os01g37832OsAffx.11366.1.S1_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37832Os.13544.1.S1_x_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37837Os.5952.4.S1_x_at11/111+21502603..21506769Seryl-tRNA synthetase, putative, expressed
LOC_Os01g37837Os.5952.2.S1_s_at11/111+21502603..21506769Seryl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23546.1.S1_at--1010--6971Chr01:21477379..21477403 (25 bp)
GTACGCGCGGTGCTTCTCCGGGCTG
LOC_Os01g37810
OsAffx.23546.1.S1_at--48--4911Chr01:21477390..21477414 (25 bp)
GCTTCTCCGGGCTGGAGTTCAGCGT
LOC_Os01g37810
OsAffx.23546.1.S1_at--151--1831Chr01:21477435..21477459 (25 bp)
ACGCCGACGCCGGTAAGCTCAAGAG
LOC_Os01g37810
OsAffx.23546.1.S1_at--561--4151Chr01:21477436..21477460 (25 bp)
CGCCGACGCCGGTAAGCTCAAGAGC
LOC_Os01g37810
OsAffx.23546.1.S1_at--836--1571Chr01:21477450..21477474 (25 bp)
AGCTCAAGAGCCAGATCAAGAAGTG
LOC_Os01g37810
OsAffx.23546.1.S1_at--483--1411Chr01:21477468..21477492 (25 bp)
AGAAGTGGGCGAAGGCCGTCGTTGC
LOC_Os01g37810
OsAffx.23546.1.S1_at--1130--4491Chr01:21477482..21477506 (25 bp)
GCCGTCGTTGCGTACGCGCGCCAGA
LOC_Os01g37810
OsAffx.23546.1.S1_at--943--4631Chr01:21477491..21477515 (25 bp)
GCGTACGCGCGCCAGATCAGCTTCG
LOC_Os01g37810
OsAffx.23546.1.S1_at--322--9951Chr01:21477494..21477518 (25 bp)
TACGCGCGCCAGATCAGCTTCGGCT
LOC_Os01g37810
OsAffx.23546.1.S1_at--864--4011Chr01:21477551..21477575 (25 bp)
CGTCGGGCCATGTCGTCGACCCGTG
LOC_Os01g37810
OsAffx.23546.1.S1_at--1080--7251Chr01:21477643..21477667 (25 bp)
GTCCAAGTCCGATCTCGGCGAAGCC
LOC_Os01g37810
Target Sequence 
GTACGCGCGGTGCTTCTCCGGGCTGGAGTTCAGCGTGGGGCCGGGGTCGCTGAGGGACGCCGACGCCGGTAAGCTCAAGA
GCCAGATCAAGAAGTGGGCGAAGGCCGTCGTTGCGTACGCGCGCCAGATCAGCTTCGGCTCGCCGAGGGCGGCGGCCAGG
TCCTCCTCCTCCCGTCGGGCCATGTCGTCGACCCGTGGCCGCGACGGCCACGCCGAAGGCGGCGGCGGCGGCGGCGCCGC
CACCGCGAGGTCGGCCACCTTCCCGTCCAAGTCCGATCTCGGCGAAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23546.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis