Browse Element(s) Details


OsAffx.23571.1.S1_x_at

Description gb:NM_193604.1
DB_XREF= gi:34914291
GEN=B1151A10.13
TID=OsAffx.23571.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1151A10.13 (B1151A10.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3907011/11LOB domain protein 22, putative
LOC_Os01g3922011/11LOB domain protein 22, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39020Os.51916.1.S1_at11/111+22265712..22268644HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g39030OsAffx.23570.1.S1_at11/111+22269091..22269555hypothetical protein
LOC_Os01g39030OsAffx.23570.1.S1_x_at11/111+22269091..22269555hypothetical protein
LOC_Os01g39040OsAffx.2190.1.S1_at11/111+22271203..22272273hypothetical protein
LOC_Os01g39050NANA1+22276787..22283338retrotransposon protein, putative, unclassified
LOC_Os01g39060Os.17577.4.A1_x_at2/111+22286787..22289844expressed protein
LOC_Os01g39070OsAffx.23571.1.S1_at11/111+22292517..22292894LOB domain protein 22, putative
LOC_Os01g39070OsAffx.23571.1.S1_x_at11/111+22292517..22292894LOB domain protein 22, putative
LOC_Os01g39080NANA1+22294831..22295418hypothetical protein
LOC_Os01g39090OsAffx.11383.1.S1_at11/111+22298067..22298312hypothetical protein
LOC_Os01g39100OsAffx.2191.1.S1_at11/111+22300534..22307329Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009799biological_processdetermination of symmetry
GO:0009954biological_processproximal/distal pattern formation
GO:0048441biological_processpetal development
GO:0005739cellular_componentmitochondrion
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23571.1.S1_x_at--331--4132Chr01:22391271..22391295 (25 bp)
CCGACCGGCCGGAGCGCTTCGAGTA
LOC_Os01g39220
OsAffx.23571.1.S1_x_at--412--7272Chr01:22391383..22391407 (25 bp)
GTCCATCGTCTTCGTGTCGGACGCG
LOC_Os01g39220
OsAffx.23571.1.S1_x_at--245--9232Chr01:22391384..22391408 (25 bp)
TCCATCGTCTTCGTGTCGGACGCGA
LOC_Os01g39220
OsAffx.23571.1.S1_x_at--436--3552Chr01:22391386..22391410 (25 bp)
CATCGTCTTCGTGTCGGACGCGAGG
LOC_Os01g39220
OsAffx.23571.1.S1_x_at--365--9572Chr01:22391391..22391415 (25 bp)
TCTTCGTGTCGGACGCGAGGGCCGC
LOC_Os01g39220
OsAffx.23571.1.S1_x_at--224--9232Chr01:22391454..22391478 (25 bp)
TCCAGCAGGAGCTCGCCAGCGTCAA
LOC_Os01g39220
OsAffx.23571.1.S1_x_at--121--5912Chr01:22391462..22391486 (25 bp)
GAGCTCGCCAGCGTCAAGGCCGAGA
LOC_Os01g39220
OsAffx.23571.1.S1_x_at--643--1592Chr01:22391463..22391487 (25 bp)
AGCTCGCCAGCGTCAAGGCCGAGAT
LOC_Os01g39220
OsAffx.23571.1.S1_x_at--159--4072Chr01:22391482..22391506 (25 bp)
CGAGATCGCCGCCATCCGGCAGAAG
LOC_Os01g39220
OsAffx.23571.1.S1_x_at--1011--6372Chr01:22391485..22391509 (25 bp)
GATCGCCGCCATCCGGCAGAAGCAG
LOC_Os01g39220
OsAffx.23571.1.S1_x_at--726--4432Chr01:22391492..22391516 (25 bp)
GCCATCCGGCAGAAGCAGCAGCAAG
LOC_Os01g39220
Target Sequence 
CCGACCGGCCGGAGCGCTTCGAGTACGCNAACCTCCTCTNCGGCGTGGACGGCATCCTCCGCCGNCTGGAGGCGGCCGGN
CCGGACNCNGNGACCCGGCNCGCCACCATGGCGTCCATCGTCTTCGTGTCGGACGCGAGGGCCGCCGANCCCGTGCACGG
CGCCTACGGCGTNATANGGAACCTCCAGCAGGAGCTCGCCAGCGTCAAGGCCGAGATCGCCGCCATCCGGCAGAAGCAGC
AGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23571.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis