Browse Element(s) Details


OsAffx.23591.1.S1_at

Description tigr:9629.m03816
TID=OsAffx.23591.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4003011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40000Os.27778.3.S1_x_at11/111+22884299..22888525expressed protein
LOC_Os01g40000Os.27778.2.S1_at11/111+22884299..22888525expressed protein
LOC_Os01g40010Os.46012.2.S1_x_at6/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.27088.1.A1_x_at6/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.46012.3.S1_x_at3/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.10263.1.S1_at2/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010OsAffx.727.1.S1_x_at2/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.45902.1.A1_x_at1/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010OsAffx.10222.1.S1_x_at1/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40020OsAffx.11398.1.S1_at11/111+22902308..22903684hypothetical protein
LOC_Os01g40030OsAffx.23591.1.S1_at11/111+22906323..22908661hypothetical protein
LOC_Os01g40040OsAffx.23592.1.S1_at11/111+22914350..22916823hypothetical protein
LOC_Os01g40050Os.11777.1.S1_at10/111+22918204..22923012peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os01g40070OsAffx.23593.1.S1_s_at11/111+22931382..22933651expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23591.1.S1_at--715--8851Chr01:22907214..22907238 (25 bp)
TGATGCAACCTTCTAATTCGACCTT
LOC_Os01g40030
OsAffx.23591.1.S1_at--814--3031Chr01:22907200..22907224 (25 bp)
AATTCGACCTTAGAAGTTCTTCCTG
LOC_Os01g40030
OsAffx.23591.1.S1_at--1152--2751Chr01:22907149..22907173 (25 bp)
AAGACTCTGGTTGCACATGTATGTA
LOC_Os01g40030
OsAffx.23591.1.S1_at--915--171Chr01:22907103..22907127 (25 bp)
ATTTTTCTTGCATTATTCGTCTCAG
LOC_Os01g40030
OsAffx.23591.1.S1_at--667--3391Chr01:22907081..22907105 (25 bp)
CAGCGGCAATGATCTTAACAGTCTA
LOC_Os01g40030
OsAffx.23591.1.S1_at--1145--3751Chr01:22906817..22906837 (21 bp)
CTCGAGGACCCTTAGCTTTGGAAGT
LOC_Os01g40030
OsAffx.23591.1.S1_at--971--6291Chr01:22906783..22906807 (25 bp)
GATGAGCATCAGGTGCTATTGCCAA
LOC_Os01g40030
OsAffx.23591.1.S1_at--222--711Chr01:22906735..22906759 (25 bp)
ATGAGTGGCGACTTTGTATGTGCAA
LOC_Os01g40030
OsAffx.23591.1.S1_at--71--7351Chr01:22906549..22906740 (25 bp)
GTGCAAATGTGCTTTCGAGTAGTTC
LOC_Os01g40030
OsAffx.23591.1.S1_at--42--4971Chr01:22906478..22906502 (25 bp)
GCATCTGAAGACATTTCTCTCAAAG
LOC_Os01g40030
OsAffx.23591.1.S1_at--887--5551Chr01:22906356..22906380 (25 bp)
GAAAGCTTCGGAAGTTGTTCCTGAA
LOC_Os01g40030
Target Sequence 
TGATGCAACCTTCTAATTCGACCTTAGAAGTTCTTCCTGTCATTGGCCCTCGAGAAATCGGGAAAAAGACTCTGGTTGCA
CATGTATGTAATGAGGAGATGGTGAAGAAACATTTTTCTTGCATTATTCGTCTCAGCGGCAATGATCTTAACAGTCTAGA
AAATGCATGGAAAAGGTTATATTCCTTGTTTTCAAAGATAAATCATCTAAACAAGGTCATACTAATTAGTTGTCTGCAGA
AGGTCTCGAGGACCCTTAGCTTTGGAAGTGAAAACCCAGATGAGCATCAGGTGCTATTGCCAATAGCAATAAAGATCGCA
ACATTAATGAGTGGCGACTTTGTATGTGCAAATGTGCTTTCGAGTAGTTCATACAGTACCACTAGGAATTTGGTAGAATG
TGGTACGCGGAAAATAGCATCTGAAGACATTTCTCTCAAAGGTGTTGCTGCTCCAAGTGAAGGAAGCTTTGAACTTGTGA
AATGGAGGTCTCCAATACCCCCATACTACAGCTATCTAGTAAAGGAATGTGTTGTTCAGAAAGCTTCGGAAGTTGTTCCT
GAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23591.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis