Browse Element(s) Details


OsAffx.23592.1.S1_at

Description tigr:9629.m03817
TID=OsAffx.23592.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4004011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40010Os.46012.2.S1_x_at6/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.27088.1.A1_x_at6/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.46012.3.S1_x_at3/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.10263.1.S1_at2/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010OsAffx.727.1.S1_x_at2/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.45902.1.A1_x_at1/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010OsAffx.10222.1.S1_x_at1/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40020OsAffx.11398.1.S1_at11/111+22902308..22903684hypothetical protein
LOC_Os01g40030OsAffx.23591.1.S1_at11/111+22906323..22908661hypothetical protein
LOC_Os01g40040OsAffx.23592.1.S1_at11/111+22914350..22916823hypothetical protein
LOC_Os01g40050Os.11777.1.S1_at10/111+22918204..22923012peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os01g40070OsAffx.23593.1.S1_s_at11/111+22931382..22933651expressed protein
LOC_Os01g40074NANA1+22937713..22938570NA
LOC_Os01g40080OsAffx.1885.1.S1_at11/111+22940988..22941618hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23592.1.S1_at--840--2571Chr01:22915760..22915784 (25 bp)
AACGGCTGCACTTCCATTTATTTGG
LOC_Os01g40040
OsAffx.23592.1.S1_at--352--8651Chr01:22915714..22915738 (25 bp)
TGGGAAAAACCGTTCTCACATTGTT
LOC_Os01g40040
OsAffx.23592.1.S1_at--298--10191Chr01:22915649..22915673 (25 bp)
TATATACCTCTACTACAAGCTTGGA
LOC_Os01g40040
OsAffx.23592.1.S1_at--591--9771Chr01:22915582..22915606 (25 bp)
TAAAACCGCAATTATTCCCACCGAG
LOC_Os01g40040
OsAffx.23592.1.S1_at--57--6151Chr01:22915548..22915572 (25 bp)
GAGGTGTTACGGTGGCAATCTCCAA
LOC_Os01g40040
OsAffx.23592.1.S1_at--96--3111Chr01:22915525..22915549 (25 bp)
AATAGCTCCCTATTACAGCTACCTG
LOC_Os01g40040
OsAffx.23592.1.S1_at--392--8131Chr01:22915484..22915508 (25 bp)
GGAAAGCTTCACAGGTTGTACCAAA
LOC_Os01g40040
OsAffx.23592.1.S1_at--675--6651Chr01:22914521..22914545 (25 bp)
GTTGATCCGCTACCAAATACGTTGT
LOC_Os01g40040
OsAffx.23592.1.S1_at--1142--311Chr01:22914505..22914529 (25 bp)
ATACGTTGTGGATCCATGTTCTCCG
LOC_Os01g40040
OsAffx.23592.1.S1_at--23--8011Chr01:22914453..22914477 (25 bp)
GGATGGGTTCTTTTGCCACTAGTAC
LOC_Os01g40040
OsAffx.23592.1.S1_at--123--2271Chr01:22914395..22914419 (25 bp)
AAATCGCCTAAACCTATTCTATTGG
LOC_Os01g40040
Target Sequence 
AACGGCTGCACTTCCATTTATTTGGGGAACACGCAAATGACCGTGTTGGGAAAAACCGTTCTCACATTGTTTTTGATATT
GCTGATGGCACCATCATTTTAGCCAATAAAATATATACCTCTACTACAAGCTTGGAGGACACGGGTGTTCCGAAAATTAC
GGTTGAAAACTTACTTAATAAAACCGCAATTATTCCCACCGAGGGAAACTTTGAGGTGTTACGGTGGCAATCTCCAATAG
CTCCCTATTACAGCTACCTGGGAAATTGTGTCAATAGGAAAGCTTCACAGGTTGTACCAAAAGAGAGGTATCTCAAGAGA
AAAAGAAAGCTAGCTCATAGGCAGAGGAAAGGTATAGTCTCGTTAACAGATAAGGAAAAGTTGATCCGCTACCAAATACG
TTGTGGATCCATGTTCTCCGGGGTAAATACTGGTTTGAGTGTTCTTGGGATGGGTTCTTTTGCCACTAGTACTAGTACAG
CTATCTACGAGAAAAGGAAACGATCAAATCGCCTAAACCTATTCTATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis