Browse Element(s) Details


OsAffx.23599.1.S1_at

Description gb:NM_192518.1
DB_XREF= gi:34912119
GEN=OSJNBb0024F06.11
TID=OsAffx.23599.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0024F06.11 (OSJNBb0024F06.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g402203/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40190OsAffx.21421.1.S1_x_at11/111+23002978..23005466transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g40190Os.56014.1.S1_at11/111+23002978..23005466transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g40200Os.25233.1.S1_at11/111+23010748..23014542DIL domain containing protein, expressed
LOC_Os01g40200Os.25233.1.S1_x_at11/111+23010748..23014542DIL domain containing protein, expressed
LOC_Os01g40200OsAffx.23597.1.S1_x_at7/111+23010748..23014542DIL domain containing protein, expressed
LOC_Os01g40210OsAffx.23598.1.S1_x_at2/111+23019913..23020560hypothetical protein
LOC_Os01g40220OsAffx.23599.1.S1_at3/111+23022128..23022513hypothetical protein
LOC_Os01g40230Os.35344.18.S1_x_at10/111+23025268..23031904transposon protein, putative, Mutator sub-class
LOC_Os01g40230Os.35344.3.S1_x_at9/111+23025268..23031904transposon protein, putative, Mutator sub-class
LOC_Os01g40230OsAffx.22940.5.S1_at7/111+23025268..23031904transposon protein, putative, Mutator sub-class
LOC_Os01g40230OsAffx.22940.5.S1_x_at5/111+23025268..23031904transposon protein, putative, Mutator sub-class
LOC_Os01g40240NANA1+23032731..23034317F-box domain containing protein
LOC_Os01g40250OsAffx.23600.2.S1_at11/111+23036434..23054930HEAT repeat family protein, expressed
LOC_Os01g40250OsAffx.23600.1.S1_at10/111+23036434..23054930HEAT repeat family protein, expressed
LOC_Os01g40250OsAffx.23600.1.S1_x_at9/111+23036434..23054930HEAT repeat family protein, expressed
LOC_Os01g40250OsAffx.7512.1.A1_at1/111+23036434..23054930HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23599.1.S1_at--1162--6911Chr01:23020557..23020581 (25 bp)
GTAGTCACGCTGGACTGCCATGTAG
NONE
OsAffx.23599.1.S1_at--63--751NONE
ATGTAGGACGGTCAGCCTGCAACGC
NONE
OsAffx.23599.1.S1_at--897--5132Chr01:23021420..23021444 (25 bp)
GCAACGCACGAGATTATTTCCACAA
NONE
OsAffx.23599.1.S1_at--226--1211Chr01:23021460..23021484 (25 bp)
AGTTTCTGTATGTCGCTATTCGGAT
NONE
OsAffx.23599.1.S1_at--424--10212Chr12:21513592..21513611 (20 bp)
TATTCGGATGTGTCGTCGGTTCAAC
NONE
OsAffx.23599.1.S1_at--505--9711Chr01:23021496..23021988 (25 bp)
TCAACTTCACCATACGTACCTGGGA
NONE
OsAffx.23599.1.S1_at--1144--9171Chr01:23022030..23022054 (25 bp)
TCCATACCGTGTGCAAACCTCAAGA
NONE
OsAffx.23599.1.S1_at--285--1351Chr01:23022115..23022139 (25 bp)
AGAGACGACGACCATGGCTCGTATT
NONE
OsAffx.23599.1.S1_at--633--6871Chr01:23022135..23022159 (25 bp)
GTATTGGCACTTGTGCAGCGATCGC
LOC_Os01g40220
OsAffx.23599.1.S1_at--998--1231Chr01:23022172..23022195 (24 bp)
AGTTGCTTTTGTTGCCTCGTCAGGA
LOC_Os01g40220
OsAffx.23599.1.S1_at--245--5811Chr01:23022424..23022448 (25 bp)
GACGCCTGCAACTCGTGGTGCCAGT
LOC_Os01g40220
Target Sequence 
GTAGTCACGCTGGACTGCCATGTAGGACGGTCAGCCTGCAACGCACGAGATTATTTCCACAATTACATTAAAAATATAGT
TTCTGTATGTCGCTATTCGGATGTGTCGTCGGTTCAACTTCACCATACGTACCTGGGAATTCCATATTTTGGAGGAAATA
CTATGACTATAAATTCACGTCCATACCGTGTGCAAACCTCAAGAACAAGCAAGATCAACGCAGAGATCGAGCAACAGAAA
CTAGTCGAGAAACTACGACGCGAAAGAGACGACGACCATGGCTCGTATTGGCACTTGTGCAGCGATCGCCCTTCTTGTCC
TAGTTGCTTTTGTTGCCTCGTCAGGAGCGGCGGCAGATCAGCCGCGTTGCTGCGTGGACTTCCACTCGTGGGGCGGGAAC
ACTGGGTGCGGCCCGGGGCAGAACGACGCCTGCAACTCGTGGTGCCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23599.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis