Browse Element(s) Details


OsAffx.2361.1.S1_x_at

Description tigr:9629.m05777
TID=OsAffx.2361.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5885011/11circadian clock coupling factor ZGT, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58790Os.11665.1.S1_at10/111+34298035..343033124-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast precursor, putative, expressed
LOC_Os01g58800Os.36776.1.S1_at11/111+34303385..34304139expressed protein
LOC_Os01g58810NANA1+34306996..34310583retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58820Os.47999.3.A1_x_at1/111+34311867..34315604retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58820OsAffx.8469.1.A1_x_at1/111+34311867..34315604retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58820Os.45173.3.S1_x_at1/111+34311867..34315604retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58820Os.47999.2.A1_x_at1/111+34311867..34315604retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58830OsAffx.31753.4.S1_s_at11/111+34319117..34321036hAT family dimerisation domain containing protein
LOC_Os01g58830OsAffx.31753.1.S1_s_at11/111+34319117..34321036hAT family dimerisation domain containing protein
LOC_Os01g58830OsAffx.31753.4.S1_at1/111+34319117..34321036hAT family dimerisation domain containing protein
LOC_Os01g58850OsAffx.2361.1.S1_x_at11/111+34323948..34324853circadian clock coupling factor ZGT, putative
LOC_Os01g58860Os.37330.1.S1_at11/111+34330540..34333308Auxin Efflux Carrier family protein, expressed
LOC_Os01g58870NANA1+34344413..34346076phosphate translocator, putative, expressed
LOC_Os01g58880OsAffx.11653.1.S1_at1/111+34349002..34349313hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2361.1.S1_x_at--493--4111Chr01:34324330..34324354 (25 bp)
CGAAGATGCTCTTCTTCTGCTGCGG
LOC_Os01g58850
OsAffx.2361.1.S1_x_at--548--7991Chr01:34324390..34324414 (25 bp)
GGATGTCCCGCTTCTCCAAGACGTC
LOC_Os01g58850
OsAffx.2361.1.S1_x_at--670--4111Chr01:34324398..34324422 (25 bp)
CGCTTCTCCAAGACGTCCGGGCGGA
LOC_Os01g58850
OsAffx.2361.1.S1_x_at--701--1891Chr01:34324410..34324434 (25 bp)
ACGTCCGGGCGGAGCTTCCTGTCGC
LOC_Os01g58850
OsAffx.2361.1.S1_x_at--431--8091Chr01:34324444..34324468 (25 bp)
GGAGCGACCTGCTGTACGTGTCCGA
LOC_Os01g58850
OsAffx.2361.1.S1_x_at--147--7131Chr01:34324524..34324548 (25 bp)
GTCTTCCGCGGGTTCATGCGGTCCC
LOC_Os01g58850
OsAffx.2361.1.S1_x_at--92--8411Chr01:34324614..34324638 (25 bp)
GGCGCGCGCGTCTGGAGCATGGTCG
LOC_Os01g58850
OsAffx.2361.1.S1_x_at--805--9371Chr01:34324684..34324708 (25 bp)
TCGAGGGCCGCCTCGAGTACTACGT
LOC_Os01g58850
OsAffx.2361.1.S1_x_at--905--4051Chr01:34324697..34324721 (25 bp)
CGAGTACTACGTCTGCGTCAGCGGT
LOC_Os01g58850
OsAffx.2361.1.S1_x_at--683--9671Chr01:34324753..34324777 (25 bp)
TCACCTCCAGCGAAGGCGAGCACGA
LOC_Os01g58850
OsAffx.2361.1.S1_x_at--1070--5711Chr01:34324794..34324818 (25 bp)
GACTCCGACGCGTCGACGCAAGGCG
LOC_Os01g58850
Target Sequence 
CGAAGATGCTCTTCTTCTGCTGCGGCGCGGCGGGGCCGGGCGTGCCGGGGCACTTCACCCGGATGTCCCGCTTCTCCAAG
ACGTCCGGGCGGAGCTTCCTGTCGCGGCGGTGCAGGAGCGACCTGCTGTACGTGTCCGACCCGTGCGAGCACGCGGTGGC
CGGCGCGGGCGACGACCTGGGCGCCTACCGGGGCGTCTTCCGCGGGTTCATGCGGTCCCGGACGCGGGCCTGCCTGGTGG
GGCGCCAGGCCGCGCTGGACCCGCGCGTGCGCTGCCCCTACTGCGGCGCGCGCGTCTGGAGCATGGTCGCCGCGGGGATG
GTGCCGCGCACCGCGTGGCGGAGGCTGGGCTGCCTCGAGGGCCGCCTCGAGTACTACGTCTGCGTCAGCGGTCACCTCCA
CGGCAACTGCTGGCTCGCCCGCCTCACCTCCAGCGAAGGCGAGCACGACGCCGGCTCCGGCTCCGACTCCGACGCGTCGA
CGCAAGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2361.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis