Browse Element(s) Details


OsAffx.23690.1.S1_at

Description tigr:9629.m04468
TID=OsAffx.23690.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4665010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46620OsAffx.23689.1.S1_at8/111+26867268..26867621hypothetical protein
LOC_Os01g46626NANA1+26872629..26876928retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g46632Os.45173.1.S1_x_at1/111+26879163..26882391retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g46640OsAffx.11492.1.S1_at11/111+26886103..26886951hypothetical protein
LOC_Os01g46650OsAffx.23690.1.S1_at10/111+26892208..26894097hypothetical protein
LOC_Os01g46660OsAffx.12611.1.S1_at1/111+26895037..26900663transposon protein, putative, Mutator sub-class
LOC_Os01g46670OsAffx.23691.1.S1_at10/111+26903393..26904848hypothetical protein
LOC_Os01g46680OsAffx.23692.1.S1_at11/111+26908099..26908314hypothetical protein
LOC_Os01g46690OsAffx.2258.1.S1_at11/111+26910144..26912751hypothetical protein
LOC_Os01g46700Os.25567.1.S1_at7/111+26919071..26926245SET domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23690.1.S1_at--1151--4191Chr01:26892311..26892335 (25 bp)
CCCGCAAGATTTGGGCCTGGCTCGA
LOC_Os01g46650
OsAffx.23690.1.S1_at--527--952Chr01:26892338..26892362 (25 bp)
AGGAAATGAAATCCGCATCCGCCGT
LOC_Os01g46650
OsAffx.23690.1.S1_at--325--551NONE
ATCCGCCGTGTCCAGAAGATCCTGT
NONE
OsAffx.23690.1.S1_at--1079--2791Chr01:26893380..26893404 (25 bp)
AAGATCCTGTAGCACCTGGGTTTCA
LOC_Os01g46650
OsAffx.23690.1.S1_at--481--3371Chr01:26893392..26893416 (25 bp)
CACCTGGGTTTCATACATGCTTTCA
LOC_Os01g46650
OsAffx.23690.1.S1_at--885--7851Chr01:26893398..26893420 (23 bp)
GGTTTCATACATGCTTTCAATGGAA
LOC_Os01g46650
OsAffx.23690.1.S1_at--210--851Chr01:26893908..26893930 (23 bp)
ATGGAAATTCATAATGGGCCTCCAA
LOC_Os01g46650
OsAffx.23690.1.S1_at--140--9611Chr01:26893914..26893938 (25 bp)
TCATAATGGGCCTCCAAAATCCAAG
LOC_Os01g46650
OsAffx.23690.1.S1_at--579--2131Chr01:26893929..26893953 (25 bp)
AAAATCCAAGAGTGGGCCAACACCA
LOC_Os01g46650
OsAffx.23690.1.S1_at--439--1751Chr01:26893986..26894010 (25 bp)
ACCTCCACCAACTTCTAAGCTGATT
LOC_Os01g46650
OsAffx.23690.1.S1_at--1103--2511Chr01:26893995..26894019 (25 bp)
AACTTCTAAGCTGATTGGGCCGCCA
LOC_Os01g46650
Target Sequence 
CCCGCAAGATTTGGGCCTGGCTCGACGAGGAAATGAAATCCGCATCCGCCGTGTCCAGAAGATCCTGTAGCACCTGGGTT
TCATACATGCTTTCAATGGAAATTCATAATGGGCCTCCAAAATCCAAGAGTGGGCCAACACCACCAACTCGCAGGCCGGA
GATCCAGATCGTGCCACCTCCACCAACTTCTAAGCTGATTGGGCCGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23690.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis