Browse Element(s) Details


OsAffx.23706.1.S1_at

Description tigr:9629.m04626
TID=OsAffx.23706.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4812011/11hypothetical protein
LOC_Os12g051902/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48070NANA1+27856283..27857560retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g48080OsAffx.11512.1.S1_at11/111+27859761..27860405hypothetical protein
LOC_Os01g48090NANA1+27863565..27864842hypothetical protein
LOC_Os01g48100OsAffx.11513.1.S1_at11/111+27867816..27868313hypothetical protein
LOC_Os01g48110OsAffx.23705.1.S1_at11/111+27869266..27869800hypothetical protein
LOC_Os01g48120OsAffx.23706.1.S1_at11/111+27873667..27875087hypothetical protein
LOC_Os01g48130Os.9851.1.S1_at11/111+27882875..27887529no apical meristem, putative, expressed
LOC_Os01g48140OsAffx.11514.1.S1_x_at11/111+27892680..27897321pentatricopeptide, putative
LOC_Os01g48140OsAffx.11514.1.S1_at11/111+27892680..27897321pentatricopeptide, putative
LOC_Os01g48140OsAffx.11514.2.S1_at9/111+27892680..27897321pentatricopeptide, putative
LOC_Os01g48150NANA1+27898052..27898793expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23706.1.S1_at--466--9391Chr01:27874191..27874215 (25 bp)
TCGTCTTTCCCGTGGTTGGCCAGGC
LOC_Os01g48120
OsAffx.23706.1.S1_at--87--7811Chr01:27874166..27874190 (25 bp)
GGTCGCTGTGTTCGAAGAGCTCCTC
LOC_Os01g48120
OsAffx.23706.1.S1_at--409--891Chr01:27874108..27874132 (25 bp)
AGGCGTTGGCCGGTCTACCAGAAAG
LOC_Os01g48120
OsAffx.23706.1.S1_at--539--6611Chr01:27874104..27874128 (25 bp)
GTTGGCCGGTCTACCAGAAAGACTC
LOC_Os01g48120
OsAffx.23706.1.S1_at--74--1433Chr05:26640794..26640815 (22 bp)
AGAAAGACTCAGGTTGCCAAGGCGA
NONE
OsAffx.23706.1.S1_at--344--7913Chr05:26640802..26640825 (24 bp)
GGTTGCCAAGGCGAGGTTGTTCCCG
NONE
OsAffx.23706.1.S1_at--121--10671Chr01:27873957..27873981 (25 bp)
TTCCTTGTTGTCGACCAGGCTAACC
LOC_Os01g48120
OsAffx.23706.1.S1_at--1154--911Chr01:27873941..27873965 (25 bp)
AGGCTAACCCTGTTTGGCGAGCTCC
LOC_Os01g48120
OsAffx.23706.1.S1_at--461--3491Chr01:27873830..27873854 (25 bp)
CATGTCCGGACTCCCTTAAGTTGGA
LOC_Os01g48120
OsAffx.23706.1.S1_at--55--8131Chr01:27873823..27873847 (25 bp)
GGACTCCCTTAAGTTGGATTCAACG
LOC_Os01g48120
OsAffx.23706.1.S1_at--542--3931Chr01:27873770..27873794 (25 bp)
CGGCTTGGGTCAGCTACCTGGCGGA
LOC_Os01g48120
Target Sequence 
TCGTCTTTCCCGTGGTTGGCCAGGCGGTCGCTGTGTTCGAAGAGCTCCTCCCCTTCTTTGTGGGGAGCTTCTAGGCACGG
TGAAGGCGTTGGCCGGTCTACCAGAAAGACTCAGGTTGCCAAGGCGAGGTTGTTCCCGGTCCGGTCCCATAGGTCGGATT
CGACGTGGAGGCTGAAGGGCGGCGTGGCGGAGGTGGCCTGGGTCAGCGTGCTAGGGCGTGGCGGCGGGGTCGTCTTCCTT
GTTGTCGACCAGGCTAACCCTGTTTGGCGAGCTCCTCCCCTCTCTGCGGGGAGCTTCTTGACAGGCTGGTGGCGGTGGTC
AGTTGACAAGGAAAACTCAGGTTGCCGAGGCAATGTTGTTCCATGTCCGGACTCCCTTAAGTTGGATTCAACGGGGAAGC
CGGCGGGCGGCGTGGCAGAGGCGGCTTGGGTCAGCTACCTGGCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23706.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis