Browse Element(s) Details


OsAffx.23866.1.S1_at

Description tigr:9629.m05896
TID=OsAffx.23866.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6005011/11microtubule bundling polypeptide TMBP200, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60040Os.31272.1.S2_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.2.S1_x_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.1.S1_a_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.1.S2_a_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60050OsAffx.23866.1.S1_at11/111+35058059..35062051microtubule bundling polypeptide TMBP200, putative
LOC_Os01g60060OsAffx.21650.1.S1_x_at11/111+35065597..35070720Protein kinase domain containing protein, expressed
LOC_Os01g60070OsAffx.23867.1.S1_at11/111+35072467..35072676hypothetical protein
LOC_Os01g60080Os.12300.1.S1_at11/111+35073709..35076363L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os01g60080OsAffx.27264.1.S1_s_at2/111+35073709..35076363L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os01g60090Os.40360.1.S1_x_at1/111+35079477..35081501hypothetical protein
LOC_Os01g60100NANA1+35082191..35084502hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0000910biological_processcytokinesis
GO:0009920biological_processcell plate formation (sensu Magnoliophyta)
GO:0005819cellular_componentspindle
GO:0005874cellular_componentmicrotubule
GO:0009524cellular_componentphragmoplast
GO:0009574cellular_componentpreprophase band
GO:0030981cellular_componentcortical microtubule cytoskeleton
GO:0008017molecular_functionmicrotubule binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23866.1.S1_at--950--9651Chr01:35060114..35060138 (25 bp)
TCAGCAATTGCTAAGCCAGCTCACA
LOC_Os01g60050
OsAffx.23866.1.S1_at--969--4411Chr01:35059993..35060124 (25 bp)
GCCAGCTCACAAGATAAGGTTCATA
LOC_Os01g60050
OsAffx.23866.1.S1_at--377--9591Chr01:35059927..35059951 (25 bp)
TCTTGTTGATCCTGTACATACCTTA
LOC_Os01g60050
OsAffx.23866.1.S1_at--1062--9871Chr01:35059913..35059937 (25 bp)
TACATACCTTAACACCACCTGAGGA
LOC_Os01g60050
OsAffx.23866.1.S1_at--414--1771Chr01:35059897..35059921 (25 bp)
ACCTGAGGAGTCTGGATTCTGTGAT
LOC_Os01g60050
OsAffx.23866.1.S1_at--192--4851Chr01:35059749..35059773 (25 bp)
GCTACGGAGCTAACCAAGCTTTCTT
LOC_Os01g60050
OsAffx.23866.1.S1_at--1149--3151Chr01:35059714..35059738 (25 bp)
AATTGCTACTGGTGATTTTGAAGAC
LOC_Os01g60050
OsAffx.23866.1.S1_at--702--2711Chr01:35058246..35058270 (25 bp)
AAGCATCTCTTATCAGTGCAAGGGC
LOC_Os01g60050
OsAffx.23866.1.S1_at--1128--3211Chr01:35058228..35058252 (25 bp)
CAAGGGCACAGATTGATGAGCTCAT
LOC_Os01g60050
OsAffx.23866.1.S1_at--686--6291Chr01:35058214..35058238 (25 bp)
GATGAGCTCATGACTGCGCATAATG
LOC_Os01g60050
OsAffx.23866.1.S1_at--727--10691Chr01:35058152..35058176 (25 bp)
TTGCTCGGCTTGTAAACTTAGTGCT
LOC_Os01g60050
Target Sequence 
TCAGCAATTGCTAAGCCAGCTCACAAGATAAGGTTCATACGGTGTTATGATTGTACATGGACGTTGATCGATGAGTATGA
TCTTGTTGATCCTGTACATACCTTAACACCACCTGAGGAGTCTGGATTCTGTGATGGTGTGAAAGCAACTAAGTGGTCCG
AAAGGAGGGATGCTACGGAGCTAACCAAGCTTTCTTCAACAAAAAGAATTGCTACTGGTGATTTTGAAGACATCTGTCCA
ACACCCAAGAAGGAGGACAACACTGAGATTAAAGCATCTCTTATCAGTGCAAGGGCACAGATTGATGAGCTCATGACTGC
GCATAATGCAGTGACTGATAGGAGAAGAAAACTCAAGGAGAAAGATTGCTCGGCTTGTAAACTTAGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23866.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis