Browse Element(s) Details


OsAffx.23869.1.S1_at

Description gb:NM_191084.1
DB_XREF= gi:34909251
GEN=B1148D12.14
TID=OsAffx.23869.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1148D12.14 (B1148D12.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6014011/11cation/hydrogen exchanger, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60110Os.34196.1.S1_at11/111+35096211..35099217expressed protein
LOC_Os01g60120Os.8845.1.S1_at11/111+35102974..35107712expressed protein
LOC_Os01g60130OsAffx.11673.2.S1_at11/111+35112250..35113259hypothetical protein
LOC_Os01g60130OsAffx.11673.1.S1_at3/111+35112250..35113259hypothetical protein
LOC_Os01g60140OsAffx.23869.1.S1_at11/111+35115389..35118260cation/hydrogen exchanger, putative, expressed
LOC_Os01g60150NANA1+35123100..35123507hypothetical protein
LOC_Os01g60160OsAffx.11674.1.S1_x_at11/111+35127306..35127677hypothetical protein
LOC_Os01g60160OsAffx.11674.1.S1_at11/111+35127306..35127677hypothetical protein
LOC_Os01g60170Os.42186.1.S1_at11/111+35128008..35128880expressed protein
LOC_Os01g60180NANA1+35130341..35130895hypothetical protein
LOC_Os01g60190Os.4899.1.S1_a_at11/111+35131159..351349052,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed
LOC_Os01g60200Os.6496.1.S1_a_at11/111+35135032..35139051expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0005451molecular_functionmonovalent cation:proton antiporter activity
GO:0015385molecular_functionsodium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23869.1.S1_at--1159--4571Chr01:35117756..35117780 (25 bp)
GCGCTCGATCGGCATAGACACGGAA
LOC_Os01g60140
OsAffx.23869.1.S1_at--726--1931Chr01:35117775..35117799 (25 bp)
ACGGAAGGCAAGACCGAGCTGCAGA
LOC_Os01g60140
OsAffx.23869.1.S1_at--217--6091Chr01:35117808..35117832 (25 bp)
GAGTACCTCGGCGACTTCAGGACGC
LOC_Os01g60140
OsAffx.23869.1.S1_at--1075--10531Chr01:35117823..35117847 (25 bp)
TTCAGGACGCGCAACATCGGCAACG
LOC_Os01g60140
OsAffx.23869.1.S1_at--167--4411Chr01:35117850..35117874 (25 bp)
GCCATCTCGTACTCCGACAAGGTGG
LOC_Os01g60140
OsAffx.23869.1.S1_at--998--9451Chr01:35117898..35117922 (25 bp)
TCGGCCATCCGGAACATGGACGACA
LOC_Os01g60140
OsAffx.23869.1.S1_at--241--7571Chr01:35118018..35118042 (25 bp)
GGGCCCATCGGCGACATGCTCGTGT
LOC_Os01g60140
OsAffx.23869.1.S1_at--650--9091Chr01:35118034..35118058 (25 bp)
TGCTCGTGTCGTCGGACTTCTCGAT
LOC_Os01g60140
OsAffx.23869.1.S1_at--463--5691Chr01:35118048..35118072 (25 bp)
GACTTCTCGATGTCGGTGTCGGTGC
LOC_Os01g60140
OsAffx.23869.1.S1_at--763--7291Chr01:35118150..35118174 (25 bp)
GTGCGCCAGTACGTGAGCAACGCAA
LOC_Os01g60140
OsAffx.23869.1.S1_at--165--7391Chr01:35118162..35118186 (25 bp)
GTGAGCAACGCAAACCAGCGGCCGT
LOC_Os01g60140
Target Sequence 
GCGCTCGATCGGCATAGACACGGAAGGCAAGACCGAGCTGCAGATGGACGAGGAGTACCTCGGCGACTTCAGGACGCGCA
ACATCGGCAACGACGCCATCTCGTACTCCGACAAGGTGGTGGCCAACAGCGAGGAGACGGTGTCGGCCATCCGGAACATG
GACGACAGCCTCCACGAGCTGTACATCGTCGGGAGGCGCCCCGGGGAGGCCGGCTCGCCGATGACGGCGTCGCTGGAGGA
CTGGATGGAGTGCCCGGAGCTGGGGCCCATCGGCGACATGCTCGTGTCGTCGGACTTCTCGATGTCGGTGTCGGTGCTGG
TGGTGCAGCAGTACGTGGTGGCCGCGGCGGCGCCCGCGCCTGCCACCACCGCGCCTGCCGGGAACGCCGATCCGGTGCGC
CAGTACGTGAGCAACGCAAACCAGCGGCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23869.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis