Browse Element(s) Details


OsAffx.23886.1.S1_x_at

Description gb:NM_190476.1
DB_XREF= gi:34908035
GEN=P0460C04.28
TID=OsAffx.23886.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0460C04.28 (P0460C04.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g618405/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61800OsAffx.21767.1.S1_at6/111+36079339..36081044ZmEBE-1 protein, putative, expressed
LOC_Os01g61810Os.22637.1.S1_a_at11/111+36083183..36085512CCAAT-binding transcription factor subunit HAP3A, putative, expressed
LOC_Os01g61820Os.26532.1.S1_a_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.26532.1.S1_x_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.26532.2.S1_x_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.57454.1.S1_x_at7/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820OsAffx.28576.2.S1_x_at1/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820OsAffx.22334.1.S1_at1/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61830Os.32086.3.S1_s_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.1.S1_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.2.S1_x_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.3.S1_x_at10/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61840OsAffx.23886.1.S1_x_at5/111+36102919..36103158hypothetical protein
LOC_Os01g61850NANA1+36108739..36109430expressed protein
LOC_Os01g61860OsAffx.23887.2.S1_x_at11/111+36111315..36120301RabGAP/TBC domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23886.1.S1_x_at--216--3511Chr01:36103042..36103066 (25 bp)
CATGGGAAAGCAAATCGTGGCGGCC
LOC_Os01g61840
OsAffx.23886.1.S1_x_at--118--2351Chr01:36103036..36103060 (25 bp)
AAAGCAAATCGTGGCGGCCGCGGCA
LOC_Os01g61840
OsAffx.23886.1.S1_x_at--130--4711Chr01:36102996..36103020 (25 bp)
GCGGCGCTTGCCTGCGAGAAGACGG
LOC_Os01g61840
OsAffx.23886.1.S1_x_at--663--8471Chr01:36102964..36102988 (25 bp)
TGGCGCTGGCTCTGGCGACAAGAAA
LOC_Os01g61840
OsAffx.23886.1.S1_x_at--937--9451Chr01:36102954..36102978 (25 bp)
TCTGGCGACAAGAAAGGCAGTGGCA
LOC_Os01g61840
OsAffx.23886.1.S1_x_at--515--2211Chr01:36100262..36100286 (25 bp)
ACAACGGCGAGGTCAGCACGCGGAA
NONE
OsAffx.23886.1.S1_x_at--1034--7993Chr11:8082461..8082585 (25 bp)
GGATGGGATGGCGAACTCGACAAAA
NONE
OsAffx.23886.1.S1_x_at--210--9351NONE
TCGACAAAAGGGAGTACAGCACAAG
NONE
OsAffx.23886.1.S1_x_at--680--8031Chr01:36099750..36099774 (25 bp)
GGAGTACAGCACAAGAACCTCACCG
NONE
OsAffx.23886.1.S1_x_at--904--9671Chr01:36099731..36099755 (25 bp)
TCACCGGCAGAACGCAACCAAGGCG
NONE
OsAffx.23886.1.S1_x_at--390--3951Chr01:36099727..36099751 (25 bp)
CGGCAGAACGCAACCAAGGCGGGCA
NONE
Target Sequence 
CATGGGAAAGCAAATCGTGGCGGCCGCGGCAGCCGTGGCCACCGCGGCGGCGCTTGCCTGCGAGAAGACGGGCGGCGGTG
GCGCTGGCTCTGGCGACAAGAAAGGCAGTGGCAGGCCGGCCCCCGTGNNCNGNGNCNNGNNGANNTNNTCCGCTGCCGAC
GGCAGGGGTGCCGCGCTTGGCGCTCGCCGGCGCACCACCCTCCCCCCCCCCTCGCCGAAACAACGGCGAGGTCAGCACGC
GGAAGCGGGCGGCGGAGGATTCGGCGGCGGGGGAGCTCGGCGTTGGCTAGCGAGGGCGCCGTCGCTTCACCACCTCCGCG
GGCGAGCTCCTCTCGTCGCCGCCGGATGGGATGGCGAACTCGACAAAAGGGAGTACAGCACAAGAACCTCACCGGCAGAA
CGCAACCAAGGCGGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23886.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis