Browse Element(s) Details


Os.26532.2.S1_x_at

Description gb:CF292033
DB_XREF= gi:33661066
DB_XREF=14ROOT--02-L06.g1
CLONE=14ROOT--02-L06
TID=Os.26532.2
CNT=21
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26532 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) 40S ribosomal protein S23 (P0460C04.26), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6182011/11ribosomal protein S23 containing protein, expressed
LOC_Os10g209902/11Ribosomal protein S12 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61780Os.14624.2.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_a_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61800OsAffx.21767.1.S1_at6/111+36079339..36081044ZmEBE-1 protein, putative, expressed
LOC_Os01g61810Os.22637.1.S1_a_at11/111+36083183..36085512CCAAT-binding transcription factor subunit HAP3A, putative, expressed
LOC_Os01g61820Os.26532.1.S1_a_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.26532.1.S1_x_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.26532.2.S1_x_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.57454.1.S1_x_at7/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820OsAffx.28576.2.S1_x_at1/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820OsAffx.22334.1.S1_at1/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61830Os.32086.3.S1_s_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.1.S1_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.2.S1_x_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.3.S1_x_at10/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61840OsAffx.23886.1.S1_x_at5/111+36102919..36103158hypothetical protein
LOC_Os01g61850NANA1+36108739..36109430expressed protein
LOC_Os01g61860OsAffx.23887.2.S1_x_at11/111+36111315..36120301RabGAP/TBC domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26532.2.S1_x_at--7--2773Chr10:10298387..10298406 (20 bp)
AAGACCCACCGCAGGAACCAGAGAT
LOC_Os10g20990
Os.26532.2.S1_x_at--1033--5532Chr01:36091166..36091190 (25 bp)
GAAACCCTTTGCTGGGTCATCTCAT
LOC_Os01g61820
Os.26532.2.S1_x_at--637--8193Chr10:10298111..10298135 (25 bp)
GGAAGAAGATTGCTGCCTTTGTGCC
LOC_Os10g20990
Os.26532.2.S1_x_at--941--9172Chr01:36090950..36090974 (25 bp)
TGCCTTTGTGCCCAATGACGGTTGC
LOC_Os01g61820
Os.26532.2.S1_x_at--616--5753Chr02:19860701..19860722 (22 bp)
GACGGTTGCCTGAACTTCATTGAGG
NONE
Os.26532.2.S1_x_at--1086--9112Chr01:36090817..36090841 (25 bp)
TGCTGGATTTGGTCGTAAGGGCCAT
LOC_Os01g61820
Os.26532.2.S1_x_at--1050--5352Chr01:36090628..36090652 (25 bp)
GAAGATGGTTCCTTGCTATGTTTAA
LOC_Os01g61820
Os.26532.2.S1_x_at--766--7832Chr01:36090567..36090591 (25 bp)
GGTAAAAACCATGCCTTGTCATCAG
LOC_Os01g61820
Os.26532.2.S1_x_at--465--9191Chr01:36090556..36090580 (25 bp)
TGCCTTGTCATCAGATTTTGCTTCT
LOC_Os01g61820
Os.26532.2.S1_x_at--1071--3551Chr01:36090548..36090572 (25 bp)
CATCAGATTTTGCTTCTGTCGAGGG
LOC_Os01g61820
Os.26532.2.S1_x_at--408--9471Chr01:36090534..36090558 (25 bp)
TCTGTCGAGGGAAAGTACTATGCTG
LOC_Os01g61820
Target Sequence 
AAGACCCACCGCAGGAACCAGAGATGGGCAGACAAGGCCTACAAGAAGAGCCACTTGGGTAATGAGTGGAAGAAACCCTT
TGCTGGGTCATCTCATGCCAAGGGCATCGTTCTGGAGAAGATTGGTATTGAGGCCAAGCAGCCCAACTCTGCCATCCGTA
AGTGTGCTCGTGTGCAGCTTGTGAAGAATGGGAAGAAGATTGCTGCCTTTGTGCCCAATGACGGTTGCCTGAACTTCATT
GAGGAAAATGATGAGGTGTTGATTGCTGGATTTGGTCGTAAGGGCCATGCTGTGGGAGATATTCCTGGTGTCCGATTCAA
GGTCGTCAAGGTCTCTGGTGTGTCTCTCCTTGCTCTCTTCAAGGAGAAGAAGGAGAAGCCCAGGTCTTAGATTACTGGTA
CATCTTGGTTGGCAAGCATGGAATAGACAGAATGAAGGCTTTAGATGCTCAAGAAGATGGTTCCTTGCTATGTTTAAAGT
GCACTCTCTATATTGTTAACTTAAGATTGTGTTGGTAAAAACCATGCCTTGTCATCAGATTTTGCTTCTGTCGAGGGAAA
GTACTATGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26532.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis