Browse Element(s) Details


OsAffx.21767.1.S1_at

Description gb:NM_190471.1
DB_XREF= gi:34908025
GEN=P0460C04.23
TID=OsAffx.21767.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0460C04.23 (P0460C04.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g618006/11ZmEBE-1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61780Os.14624.2.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_a_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61800OsAffx.21767.1.S1_at6/111+36079339..36081044ZmEBE-1 protein, putative, expressed
LOC_Os01g61810Os.22637.1.S1_a_at11/111+36083183..36085512CCAAT-binding transcription factor subunit HAP3A, putative, expressed
LOC_Os01g61820Os.26532.1.S1_a_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.26532.1.S1_x_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.26532.2.S1_x_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.57454.1.S1_x_at7/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820OsAffx.28576.2.S1_x_at1/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820OsAffx.22334.1.S1_at1/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61830Os.32086.3.S1_s_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.1.S1_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.2.S1_x_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.3.S1_x_at10/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61840OsAffx.23886.1.S1_x_at5/111+36102919..36103158hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21767.1.S1_at--99--4491Chr01:36080706..36080730 (25 bp)
GCCGGAGATTGGTTACTACACTGCG
LOC_Os01g61800
OsAffx.21767.1.S1_at--457--1691Chr01:36080749..36080773 (25 bp)
ACCTAATTGGGCGTTTTCCTGCATC
LOC_Os01g61800
OsAffx.21767.1.S1_at--1148--10391Chr01:36080775..36080799 (25 bp)
TTATTCACCACCCTACGTAACAAAG
LOC_Os01g61800
OsAffx.21767.1.S1_at--471--3851Chr01:36080818..36080842 (25 bp)
CTGGTTATGCGGTGGCTCGAACGAC
LOC_Os01g61800
OsAffx.21767.1.S1_at--976--2811Chr01:36080940..36080964 (25 bp)
AAGATTCCACAAGATCTACCTGCCA
LOC_Os01g61800
OsAffx.21767.1.S1_at--737--571Chr01:36080978..36081002 (25 bp)
ATCCATCTATTCTGTATCTCCAATC
LOC_Os01g61800
OsAffx.21767.1.S1_at--1080--811Chr01:36081792..36081816 (25 bp)
ATGGTCTAGCCATCCAAGTCGTAGA
NONE
OsAffx.21767.1.S1_at--250--8511Chr01:36081817..36081841 (25 bp)
TGGAATGGTGTTTAACCCTTCCCTG
NONE
OsAffx.21767.1.S1_at--601--5231Chr01:36081847..36081871 (25 bp)
GAATATCCTGGCTACCATGAGTCTC
NONE
OsAffx.21767.1.S1_at--632--691Chr01:36081863..36081887 (25 bp)
ATGAGTCTCTTTCCAAATACGGTTT
NONE
OsAffx.21767.1.S1_at--318--531Chr01:36082538..36082562 (25 bp)
ATCGACAGCCATTACAACCAGTTTG
NONE
Target Sequence 
GCCGGAGATTGGTTACTACACTGCGGATGGGACTCAGAACCATACCTAATTGGGCGTTTTCCTGCATCCTTATTCACCAC
CCTACGTAACAAAGCTAATTACATGAAGGTCGCTGGTTATGCGGTGGCTCGAACGACCCATTTGGCTCCAATGGGAAGTG
GGTATCTTCCAAATAATCCAAAAGCTGCATCATTCAGCAACGTGCAACTTATTGATCAAGATGGCCAAACATCCAAGATT
CCACAAGATCTACCTGCCACTCAGACTTTCCCATCCATCTATTCTGTATCTCCAATCAATTTTGAGGNNNAANNCNCNNN
TNGNNGNCNNNNNNNNNNNGTCGCCAATCAGGCATCCCCACGATATGGTCTAGCCATCCAAGTCGTAGATGGAATGGTGT
TTAACCCTTCCCTGAATACGAATATCCTGGCTACCATGAGTCTCTTTCCAAATACGGTTTATGGTGATATCGACAGCCAT
TACAACCAGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21767.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis