Browse Element(s) Details

Os.14624.1.S1_a_at

Description

gb:AK100543.1
DB_XREF= gi:32985752
TID=Os.14624.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14624 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative vacuolar proton-ATPase subunit 1 (P0460C04.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023102L09, full insert sequence.
FL= gb:AK069188.1 gb:AK099857.1 gb:AK059495.1 gb:AK100543.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g61780	11/11	V-type ATPase 116kDa subunit family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g61710	Os.5854.1.S1_a_at	10/11	1	+	36027285..36034712	Coatomer delta subunit, putative, expressed
LOC_Os01g61710	Os.49267.1.S1_at	1/11	1	+	36027285..36034712	Coatomer delta subunit, putative, expressed
LOC_Os01g61720	Os.12979.1.S1_x_at	11/11	1	+	36036347..36040285	IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720	Os.12979.2.S1_at	11/11	1	+	36036347..36040285	IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720	Os.12979.3.S1_x_at	10/11	1	+	36036347..36040285	IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61730	OsAffx.11687.2.S1_at	11/11	1	+	36041450..36041839	hypothetical protein
LOC_Os01g61730	OsAffx.11687.1.S1_x_at	11/11	1	+	36041450..36041839	hypothetical protein
LOC_Os01g61730	OsAffx.11687.1.S1_at	11/11	1	+	36041450..36041839	hypothetical protein
LOC_Os01g61739	NA	NA	1	+	36045353..36046023	NA
LOC_Os01g61750	OsAffx.11688.1.S1_at	11/11	1	+	36047568..36047939	hypothetical protein
LOC_Os01g61760	Os.14198.1.S1_at	11/11	1	+	36047870..36053161	expressed protein
LOC_Os01g61760	OsAffx.20772.1.S1_at	1/11	1	+	36047870..36053161	expressed protein
LOC_Os01g61780	Os.14624.2.S1_x_at	11/11	1	+	36059514..36070531	V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780	Os.14624.1.S1_a_at	11/11	1	+	36059514..36070531	V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780	Os.14624.1.S1_x_at	11/11	1	+	36059514..36070531	V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780	Os.14624.1.S1_at	11/11	1	+	36059514..36070531	V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61800	OsAffx.21767.1.S1_at	6/11	1	+	36079339..36081044	ZmEBE-1 protein, putative, expressed
LOC_Os01g61810	Os.22637.1.S1_a_at	11/11	1	+	36083183..36085512	CCAAT-binding transcription factor subunit HAP3A, putative, expressed
LOC_Os01g61820	Os.26532.1.S1_a_at	11/11	1	+	36086918..36091915	ribosomal protein S23 containing protein, expressed
LOC_Os01g61820	Os.26532.1.S1_x_at	11/11	1	+	36086918..36091915	ribosomal protein S23 containing protein, expressed
LOC_Os01g61820	Os.26532.2.S1_x_at	11/11	1	+	36086918..36091915	ribosomal protein S23 containing protein, expressed
LOC_Os01g61820	Os.57454.1.S1_x_at	7/11	1	+	36086918..36091915	ribosomal protein S23 containing protein, expressed
LOC_Os01g61820	OsAffx.28576.2.S1_x_at	1/11	1	+	36086918..36091915	ribosomal protein S23 containing protein, expressed
LOC_Os01g61820	OsAffx.22334.1.S1_at	1/11	1	+	36086918..36091915	ribosomal protein S23 containing protein, expressed
LOC_Os01g61830	Os.32086.3.S1_s_at	11/11	1	+	36094431..36099226	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830	Os.32086.1.S1_at	11/11	1	+	36094431..36099226	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830	Os.32086.2.S1_x_at	11/11	1	+	36094431..36099226	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830	Os.32086.3.S1_x_at	10/11	1	+	36094431..36099226	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0005739	cellular_component	mitochondrion
GO:0016887	molecular_function	ATPase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.14624.1.S1_a_at--87--801	1	Chr01:36069940..36069964 (25 bp)	GGATGGCTATAAATTCAGACCCTTT	LOC_Os01g61780
Os.14624.1.S1_a_at--708--623	1	Chr01:36069941..36069965 (25 bp)	GATGGCTATAAATTCAGACCCTTTT	LOC_Os01g61780
Os.14624.1.S1_a_at--219--85	1	Chr01:36069942..36069966 (25 bp)	ATGGCTATAAATTCAGACCCTTTTC	LOC_Os01g61780
Os.14624.1.S1_a_at--477--847	1	Chr01:36069943..36069967 (25 bp)	TGGCTATAAATTCAGACCCTTTTCA	LOC_Os01g61780
Os.14624.1.S1_a_at--319--139	1	Chr01:36069956..36069980 (25 bp)	AGACCCTTTTCATTCGCTCTGCTAG	LOC_Os01g61780
Os.14624.1.S1_a_at--74--181	1	Chr01:36069958..36069982 (25 bp)	ACCCTTTTCATTCGCTCTGCTAGCT	LOC_Os01g61780
Os.14624.1.S1_a_at--656--367	1	Chr01:36069961..36069985 (25 bp)	CTTTTCATTCGCTCTGCTAGCTGAT	LOC_Os01g61780
Os.14624.1.S1_a_at--1005--1037	1	Chr01:36069962..36069986 (25 bp)	TTTTCATTCGCTCTGCTAGCTGATG	LOC_Os01g61780
Os.14624.1.S1_a_at--436--1031	1	Chr01:36069963..36069987 (25 bp)	TTTCATTCGCTCTGCTAGCTGATGA	LOC_Os01g61780
Os.14624.1.S1_a_at--514--1055	1	Chr01:36069964..36069988 (25 bp)	TTCATTCGCTCTGCTAGCTGATGAC	LOC_Os01g61780
Os.14624.1.S1_a_at--634--959	1	Chr01:36069965..36069989 (25 bp)	TCATTCGCTCTGCTAGCTGATGACG	LOC_Os01g61780

Target Sequence

GGATGGCTATAAATTCAGACCCTTTTCATTCGCTCTGCTAGCTGATGACG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis