Browse Element(s) Details


Os.14624.2.S1_x_at

Description gb:NM_190469.1
DB_XREF= gi:34908021
GEN=P0460C04.21
TID=Os.14624.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.14624 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative vacuolar proton-ATPase subunit 1 (P0460C04.21), mRNA.
PROD=putative vacuolar proton-ATPase subunit 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6178011/11V-type ATPase 116kDa subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61710Os.5854.1.S1_a_at10/111+36027285..36034712Coatomer delta subunit, putative, expressed
LOC_Os01g61710Os.49267.1.S1_at1/111+36027285..36034712Coatomer delta subunit, putative, expressed
LOC_Os01g61720Os.12979.1.S1_x_at11/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720Os.12979.2.S1_at11/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720Os.12979.3.S1_x_at10/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61730OsAffx.11687.2.S1_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61730OsAffx.11687.1.S1_x_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61730OsAffx.11687.1.S1_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61739NANA1+36045353..36046023NA
LOC_Os01g61750OsAffx.11688.1.S1_at11/111+36047568..36047939hypothetical protein
LOC_Os01g61760Os.14198.1.S1_at11/111+36047870..36053161expressed protein
LOC_Os01g61760OsAffx.20772.1.S1_at1/111+36047870..36053161expressed protein
LOC_Os01g61780Os.14624.2.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_a_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61800OsAffx.21767.1.S1_at6/111+36079339..36081044ZmEBE-1 protein, putative, expressed
LOC_Os01g61810Os.22637.1.S1_a_at11/111+36083183..36085512CCAAT-binding transcription factor subunit HAP3A, putative, expressed
LOC_Os01g61820Os.26532.1.S1_a_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.26532.1.S1_x_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.26532.2.S1_x_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.57454.1.S1_x_at7/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820OsAffx.28576.2.S1_x_at1/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820OsAffx.22334.1.S1_at1/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61830Os.32086.3.S1_s_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.1.S1_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.2.S1_x_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.3.S1_x_at10/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14624.2.S1_x_at--436--371Chr01:36067696..36067720 (25 bp)
ATCAAGTGGTGCACGGGCTCTCAAG
LOC_Os01g61780
Os.14624.2.S1_x_at--23--8331Chr01:36067711..36067734 (24 bp)
GGCTCTCAAGCTGACCTATATCATA
LOC_Os01g61780
Os.14624.2.S1_x_at--384--51Chr01:36067916..36067940 (25 bp)
ATTGTAGCTGTTCCGTGGATGCTCT
LOC_Os01g61780
Os.14624.2.S1_x_at--865--7971Chr01:36067932..36067956 (25 bp)
GGATGCTCTTCCCAAAGCCTTTTAT
LOC_Os01g61780
Os.14624.2.S1_x_at--654--6151Chr01:36069259..36069283 (25 bp)
GAGGTTTCAAGGTCACACCTATCGC
LOC_Os01g61780
Os.14624.2.S1_x_at--612--3691Chr01:36069277..36069301 (25 bp)
CTATCGCTTTCTTGGGACCTCAGAA
LOC_Os01g61780
Os.14624.2.S1_x_at--187--10751Chr01:36069393..36069417 (25 bp)
TTGAATTTGTACTTGGCGCTGTCTC
LOC_Os01g61780
Os.14624.2.S1_x_at--143--9391Chr01:36069428..36069452 (25 bp)
TCGTATCTTCGGCTTTGGGCATTAA
LOC_Os01g61780
Os.14624.2.S1_x_at--1026--1191Chr01:36069540..36069564 (25 bp)
AGTTTGGCGCATTCTGAGCTATCAA
LOC_Os01g61780
Os.14624.2.S1_x_at--289--10731Chr01:36069840..36069864 (25 bp)
TTGCTACTGCCTTTATATTGCTGGG
LOC_Os01g61780
Os.14624.2.S1_x_at--968--651Chr01:36069891..36069915 (25 bp)
ATGCACTTCGTCTACACTGGGTTGA
LOC_Os01g61780
Target Sequence 
ATCAAGTGGTGCACGGGCTCTCAAGCTGACCTATATCATATACTTTTGTTGCTTATGGCTATTGTAGCTGTTCCGTGGAT
GCTCTTCCCAAAGCCTTTTATCTTGAAGAAACTTCACAAGGAGAGGTTTCAAGGTCACACCTATCGCTTTCTTGGGACCT
CAGAAATGGATCCAGATTCTGAACCAGACTCAGCCCGGTCACGTCATGATGACTTCAACTTTAGTGAAGTTTTTGTGCAT
CAAATGATACATTCCATTGAATTTGTACTTGGCGCTGTCTCCAATACTGCATCGTATCTTCGGCTTTGGGCATTAAGTTT
GGCGCATTCTGAGCTATCAACAGTCTTCTATGAGAAACTGCTGGTACTTGCTTGGGGGTATGACAATCTTGTTGTGAAGT
TAGTGGGGCTTGTAATTTTTTCTTTTGCTACTGCCTTTATATTGCTGGGGATGGAATCATTGAGCGCCTTCCTTCATGCA
CTTCGTCTACACTGGGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14624.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis