Browse Element(s) Details


OsAffx.11688.1.S1_at

Description tigr:9629.m06086
TID=OsAffx.11688.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6175011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61710Os.5854.1.S1_a_at10/111+36027285..36034712Coatomer delta subunit, putative, expressed
LOC_Os01g61710Os.49267.1.S1_at1/111+36027285..36034712Coatomer delta subunit, putative, expressed
LOC_Os01g61720Os.12979.1.S1_x_at11/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720Os.12979.2.S1_at11/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720Os.12979.3.S1_x_at10/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61730OsAffx.11687.2.S1_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61730OsAffx.11687.1.S1_x_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61730OsAffx.11687.1.S1_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61739NANA1+36045353..36046023NA
LOC_Os01g61750OsAffx.11688.1.S1_at11/111+36047568..36047939hypothetical protein
LOC_Os01g61760Os.14198.1.S1_at11/111+36047870..36053161expressed protein
LOC_Os01g61760OsAffx.20772.1.S1_at1/111+36047870..36053161expressed protein
LOC_Os01g61780Os.14624.2.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_a_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11688.1.S1_at--472--9771Chr01:36047602..36047626 (25 bp)
TAATGCTGCCGCCTGACAGGATGGA
LOC_Os01g61750
OsAffx.11688.1.S1_at--400--4531Chr01:36047609..36047633 (25 bp)
GCCGCCTGACAGGATGGATGCTGAT
LOC_Os01g61750
OsAffx.11688.1.S1_at--1008--7751Chr01:36047760..36047784 (25 bp)
GGTGACAGTATCAGGCCCGTAGTAT
LOC_Os01g61750
OsAffx.11688.1.S1_at--537--831Chr01:36047772..36047796 (25 bp)
AGGCCCGTAGTATGGTTTGTGCTTT
LOC_Os01g61750
OsAffx.11688.1.S1_at--226--831Chr01:36047783..36047807 (25 bp)
ATGGTTTGTGCTTTACCACGGTCTA
LOC_Os01g61750
OsAffx.11688.1.S1_at--861--10731Chr01:36047788..36047812 (25 bp)
TTGTGCTTTACCACGGTCTAAACTC
LOC_Os01g61750
OsAffx.11688.1.S1_at--1039--9891Chr01:36047796..36047820 (25 bp)
TACCACGGTCTAAACTCTTCGTTTG
LOC_Os01g61750
OsAffx.11688.1.S1_at--66--3651Chr01:36047812..36047836 (25 bp)
CTTCGTTTGTTTCATCTGGGATCCT
LOC_Os01g61750
OsAffx.11688.1.S1_at--738--6811Chr01:36047820..36047844 (25 bp)
GTTTCATCTGGGATCCTGACGAAAA
LOC_Os01g61750
OsAffx.11688.1.S1_at--366--6371Chr01:36047831..36047855 (25 bp)
GATCCTGACGAAAAAGGCTGGTGAT
LOC_Os01g61750
OsAffx.11688.1.S1_at--365--6851Chr01:36047856..36047880 (25 bp)
GTTTGCTACGAAATGGGCTGGCCCA
LOC_Os01g61750
Target Sequence 
TAATGCTGCCGCCTGACAGGATGGATGCTGATGTGGTTGCAAGGCGGTTGGGTGACAGTATCAGGCCCGTAGTATGGTTT
GTGCTTTACCACGGTCTAAACTCTTCGTTTGTTTCATCTGGGATCCTGACGAAAAAGGCTGGTGATGTTTGCTACGAAAT
GGGCTGGCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11688.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis