Browse Element(s) Details


Os.14198.1.S1_at

Description gb:AK071045.1
DB_XREF= gi:32981068
TID=Os.14198.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14198 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0460C04.20 (P0460C04.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080N07, full insert sequence.
FL= gb:AK071045.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6176011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61710Os.5854.1.S1_a_at10/111+36027285..36034712Coatomer delta subunit, putative, expressed
LOC_Os01g61710Os.49267.1.S1_at1/111+36027285..36034712Coatomer delta subunit, putative, expressed
LOC_Os01g61720Os.12979.1.S1_x_at11/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720Os.12979.2.S1_at11/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720Os.12979.3.S1_x_at10/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61730OsAffx.11687.2.S1_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61730OsAffx.11687.1.S1_x_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61730OsAffx.11687.1.S1_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61739NANA1+36045353..36046023NA
LOC_Os01g61750OsAffx.11688.1.S1_at11/111+36047568..36047939hypothetical protein
LOC_Os01g61760Os.14198.1.S1_at11/111+36047870..36053161expressed protein
LOC_Os01g61760OsAffx.20772.1.S1_at1/111+36047870..36053161expressed protein
LOC_Os01g61780Os.14624.2.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_a_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14198.1.S1_at--362--4571Chr01:36048180..36048204 (25 bp)
GCGCTAGGGAATTTGCTCATCTTTT
LOC_Os01g61760
Os.14198.1.S1_at--382--9591Chr01:36048164..36048188 (25 bp)
TCATCTTTTCCCGTGTTGTAGTAAA
LOC_Os01g61760
Os.14198.1.S1_at--760--9831Chr01:36048143..36048167 (25 bp)
TAAATTCTTTTTGCCGGTTGCTTTG
LOC_Os01g61760
Os.14198.1.S1_at--387--2071Chr01:36048095..36048119 (25 bp)
ACATAGGAGTGTGCTTGTACTGGTT
LOC_Os01g61760
Os.14198.1.S1_at--756--7311Chr01:36048060..36048084 (25 bp)
GTGCTCATAGCTGTATCATACGTGG
LOC_Os01g61760
Os.14198.1.S1_at--296--8991Chr01:36048031..36048055 (25 bp)
TGAAGGGTTAATTCATCCGGGCGTG
LOC_Os01g61760
Os.14198.1.S1_at--404--3871Chr01:36047968..36047992 (25 bp)
CTGATTCTCTCAGATTCACCGATGA
LOC_Os01g61760
Os.14198.1.S1_at--270--131Chr01:36047955..36047979 (25 bp)
ATTCACCGATGAGAGCTGTTTGTAT
LOC_Os01g61760
Os.14198.1.S1_at--681--7051Chr01:36047930..36047954 (25 bp)
GTAACCTTTTGTTCTTCAATCGGCG
LOC_Os01g61760
Os.14198.1.S1_at--379--471Chr01:36047912..36047936 (25 bp)
ATCGGCGTGATTCAAACATTTCGGC
LOC_Os01g61760
Os.14198.1.S1_at--1075--191Chr01:36047895..36047919 (25 bp)
ATTTCGGCCCATTTCTCAGTCCTGG
LOC_Os01g61760
Target Sequence 
GCGCTAGGGAATTTGCTCATCTTTTCCCGTGTTGTAGTAAATTCTTTTTGCCGGTTGCTTTGGTACNAAAGGAAAAAGGA
GAAAAACATAGGAGTGTGCTTGTACTGGTTGGGGGTAAACGTGCTCATAGCTGTATCATACGTGGTATATGAAGGGTTAA
TTCATCCGGGCGTGACAGATTGGATTAGGCTTTTTGTTAGTTTTCGTCANTTCTGATTCTCTCAGATTCACCGATGAGAG
CTGTTTGTATGTAACCTTTTGTTCTTCAATCGGCGTGATTCAAACATTTCGGCCCATTTCTCAGTCCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis