Browse Element(s) Details


Os.22637.1.S1_a_at

Description gb:AB095438.1
DB_XREF= gi:30409458
GEN=OsHAP3A
TID=Os.22637.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22637 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsHAP3A mRNA for HAP3, complete cds.
PROD=HAP3
FL= gb:AB095438.1 gb:AK108142.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6181011/11CCAAT-binding transcription factor subunit HAP3A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61780Os.14624.2.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_a_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61800OsAffx.21767.1.S1_at6/111+36079339..36081044ZmEBE-1 protein, putative, expressed
LOC_Os01g61810Os.22637.1.S1_a_at11/111+36083183..36085512CCAAT-binding transcription factor subunit HAP3A, putative, expressed
LOC_Os01g61820Os.26532.1.S1_a_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.26532.1.S1_x_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.26532.2.S1_x_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.57454.1.S1_x_at7/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820OsAffx.28576.2.S1_x_at1/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820OsAffx.22334.1.S1_at1/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61830Os.32086.3.S1_s_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.1.S1_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.2.S1_x_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.3.S1_x_at10/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61840OsAffx.23886.1.S1_x_at5/111+36102919..36103158hypothetical protein
LOC_Os01g61850NANA1+36108739..36109430expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22637.1.S1_a_at--510--3611Chr01:36084881..36084905 (25 bp)
CTTGGCTTTGAGGAGTACGTTGATC
LOC_Os01g61810
Os.22637.1.S1_a_at--817--6971Chr01:36084867..36084891 (25 bp)
GTACGTTGATCCGTTGAAGATCTAT
LOC_Os01g61810
Os.22637.1.S1_a_at--683--1051Chr01:36084247..36084271 (25 bp)
AGGGTGATAGTAAGCTGTCCTCAAA
LOC_Os01g61810
Os.22637.1.S1_a_at--1006--9791Chr01:36084237..36084261 (25 bp)
TAAGCTGTCCTCAAAGGCTGGTGAT
LOC_Os01g61810
Os.22637.1.S1_a_at--582--6471Chr01:36084197..36084221 (25 bp)
GATACAATTGGTCCGCACAGTGGCG
LOC_Os01g61810
Os.22637.1.S1_a_at--134--5131Chr01:36084183..36084207 (25 bp)
GCACAGTGGCGCTAGTAGCTCAAGT
LOC_Os01g61810
Os.22637.1.S1_a_at--729--171Chr01:36083409..36083433 (25 bp)
ATTTTCACATATTGGTAGTTCTGCA
LOC_Os01g61810
Os.22637.1.S1_a_at--42--6731Chr01:36083392..36083416 (25 bp)
GTTCTGCAATCTTTTGCATTCCCAT
LOC_Os01g61810
Os.22637.1.S1_a_at--101--4951Chr01:36083377..36083401 (25 bp)
GCATTCCCATACATGTATCAGGTGG
LOC_Os01g61810
Os.22637.1.S1_a_at--395--412Chr07:13128188..13128617 (25 bp)
ATCAGGTGGCACAAATCTATTGCAA
NONE
Os.22637.1.S1_a_at--646--3691Chr01:36083345..36083369 (25 bp)
CTATTGCAAGTACCCTAGCATTGAA
LOC_Os01g61810
Target Sequence 
CTTGGCTTTGAGGAGTACGTTGATCCGTTGAAGATCTATTTACACAAGTACAGAGAGATGGAGGGTGATAGTAAGCTGTC
CTCAAAGGCTGGTGATGGTTCAGTAAAGAAGGATACAATTGGTCCGCACAGTGGCGCTAGTAGCTCAAGTGCGCAAGGGA
TGGTTGGGGCTTACACCCAAGGGATGGGTTATATGCAACCTCAGTATCATAATGGGGACACCTAAAGATGAGGACAGTGA
AAATTTTCAGTAACTGGTGTCCTCTGTGAGTTATTATCCATCTGTTAAGGAAGAACCCACATTAGGGCCATATTTATTAG
TAGAAGACTAAAGCACTTGAAGGGNTGTTNGTTTAGAAAGGGTGTTAACAGTTNGCTGTGGCGATTGCTTCACAGATGTA
AATTGCTTCATAAGTGGTTTAATGCTTGTTTTTGCCTGTATATTCAGAGCAATTTTCACATATTGGTAGTTCTGCAATCT
TTTGCATTCCCATACATGTATCAGGTGGCACAAATCTATTGCAAGTACCCTAGCATTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22637.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis