Browse Element(s) Details


OsAffx.23887.2.S1_x_at

Description tigr:9629.m06100
TID=OsAffx.23887.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=TBC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6186011/11RabGAP/TBC domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61820Os.26532.1.S1_a_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.26532.1.S1_x_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.26532.2.S1_x_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.57454.1.S1_x_at7/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820OsAffx.28576.2.S1_x_at1/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820OsAffx.22334.1.S1_at1/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61830Os.32086.3.S1_s_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.1.S1_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.2.S1_x_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.3.S1_x_at10/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61840OsAffx.23886.1.S1_x_at5/111+36102919..36103158hypothetical protein
LOC_Os01g61850NANA1+36108739..36109430expressed protein
LOC_Os01g61860OsAffx.23887.2.S1_x_at11/111+36111315..36120301RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os01g61870OsAffx.2382.1.S1_x_at11/111+36134616..36135137hypothetical protein
LOC_Os01g61880Os.5404.3.S1_a_at11/111+36139998..36145413respiratory burst oxidase homolog, putative, expressed
LOC_Os01g61890Os.5404.4.S1_at11/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61890Os.5404.1.S1_a_at11/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61890Os.5404.4.S1_x_at11/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61890Os.5404.1.S2_at10/111+36140930..36147714AT hook motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23887.2.S1_x_at--696--5171Chr01:36113446..36113576 (25 bp)
GCAAGCAATGCTTCAGGTCCTGATG
LOC_Os01g61860
OsAffx.23887.2.S1_x_at--652--5571Chr01:36113404..36113428 (25 bp)
GAAAGTCACTGAGGATGCGCGCATA
LOC_Os01g61860
OsAffx.23887.2.S1_x_at--207--7991Chr01:36113392..36113416 (25 bp)
GGATGCGCGCATATTCGCTGAGCAA
LOC_Os01g61860
OsAffx.23887.2.S1_x_at--109--3111Chr01:36113352..36113375 (24 bp)
AATATGCTGCACATGTGCTCCAGGA
LOC_Os01g61860
OsAffx.23887.2.S1_x_at--1122--5391Chr01:36112987..36113011 (25 bp)
GAAGCTATGGCTTCACTAGCACAAA
LOC_Os01g61860
OsAffx.23887.2.S1_x_at--299--2891Chr01:36112626..36112650 (25 bp)
AAGGGATGCATCACCTGGCCAAGTG
LOC_Os01g61860
OsAffx.23887.2.S1_x_at--691--5231Chr01:36112567..36112591 (25 bp)
GAATAAGTTTGCTTGCTCCGTTTTC
LOC_Os01g61860
OsAffx.23887.2.S1_x_at--466--10291Chr01:36112546..36112570 (25 bp)
TTTCCCTTGGCTGGCGTGACAAGAA
LOC_Os01g61860
OsAffx.23887.2.S1_x_at--891--8231Chr01:36111865..36111889 (25 bp)
GGCAAACAGAATATCTCCGACGAGT
LOC_Os01g61860
OsAffx.23887.2.S1_x_at--861--5751Chr01:36111847..36111871 (25 bp)
GACGAGTCAACAAACGGCAATCTTA
LOC_Os01g61860
OsAffx.23887.2.S1_x_at--410--10451Chr01:36111706..36111730 (25 bp)
TTAGACACGCCGGAGACCACAATAA
LOC_Os01g61860
Target Sequence 
GCAAGCAATGCTTCAGGTCCTGATGCGTGTAGAGCAAGAACAGAAAGTCACTGAGGATGCGCGCATATTCGCTGAGCAAG
ATGCTGCTGCTCAGAAATATGCTGCACATGTGCTCCAGGAAAAGTATGAGGAAGCTATGGCTTCACTAGCACAAATGGAG
AACAGAGCAGTCATGGCAGAAACTATGCTGGAAGCAACACTGCAGTATCAATCAAGCCAGCAAAAGGCACAATTGCCATC
CCCTTCACCTTCTCCAAGGACACCAACAAGGGATGCATCACCTGGCCAAGTGAACCAAGATTCATCACAGGAGTTTCAAC
CTAGAAGAATAAGTTTGCTTGCTCCGTTTTCCCTTGGCTGGCGTGACAAGAACAAGGGCAAACAGAATATCTCCGACGAG
TCAACAAACGGCAATCTTAATAGCAATACTGAGCAAATGGTTGACACACCCAAGAAGGATGATGAAAAGCAAGGAGACTC
TCCACAGGAGGGTGAACAAAGAGTGGATACACCCAGAAGAGATAGTGAGCACAGATTAGACACGCCGGAGACCACAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23887.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis