Browse Element(s) Details


OsAffx.23890.1.S1_at

Description tigr:9636.m03918
TID=OsAffx.23890.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3886011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38820Os.26724.1.S1_at10/118+24404843..24409326Endomembrane protein 70 containing protein, expressed
LOC_Os08g38830OsAffx.17411.1.S1_at11/118+24410006..24412288hypothetical protein
LOC_Os08g38840OsAffx.6077.1.S1_at11/118+24415173..24417501hypothetical protein
LOC_Os08g38850Os.49109.1.S1_at11/118+24428050..24433246CRAL/TRIO, N-terminus family protein, expressed
LOC_Os08g38850Os.49109.1.S2_at11/118+24428050..24433246CRAL/TRIO, N-terminus family protein, expressed
LOC_Os08g38860OsAffx.23890.1.S1_at11/118+24433436..24435215hypothetical protein
LOC_Os08g38860OsAffx.23890.4.S1_x_at3/118+24433436..24435215hypothetical protein
LOC_Os08g38870NANA8+24435642..24435905hypothetical protein
LOC_Os08g38880Os.9948.1.S1_at11/118+24442796..24446513WD-40 repeat family protein, putative, expressed
LOC_Os08g38890Os.48412.1.A1_at11/118+24448492..24450852expressed protein
LOC_Os08g38900Os.4244.1.S1_at11/118+24453660..24455126Caffeoyl-CoA O-methyltransferase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23890.1.S1_at--509--1431Chr08:24434301..24434325 (25 bp)
AGAACAGGACTTACTGGCAGTAGCA
LOC_Os08g38860
OsAffx.23890.1.S1_at--544--2051Chr08:24434293..24434317 (25 bp)
ACTTACTGGCAGTAGCAGATGGTGA
LOC_Os08g38860
OsAffx.23890.1.S1_at--581--3431Chr08:24434278..24434302 (25 bp)
CAGATGGTGAAATTTGTGGTGGCAA
LOC_Os08g38860
OsAffx.23890.1.S1_at--249--8451Chr08:24434253..24434277 (25 bp)
TGGCGGCAACGGACAAATTTCTCGG
LOC_Os08g38860
OsAffx.23890.1.S1_at--382--10331Chr08:24434219..24434243 (25 bp)
TTTCAAGCGGAGAAACAGCCCATCT
LOC_Os08g38860
OsAffx.23890.1.S1_at--689--2471Chr08:24434206..24434230 (25 bp)
AACAGCCCATCTCACAAATCACAAT
LOC_Os08g38860
OsAffx.23890.1.S1_at--518--531Chr08:24434180..24434200 (21 bp)
ATCGCCATCCTAGCTCAACAGAAAA
LOC_Os08g38860
OsAffx.23890.1.S1_at--565--4411Chr08:24433500..24433524 (25 bp)
GCCAGCCGACCGACGCTAGTGATAG
LOC_Os08g38860
OsAffx.23890.1.S1_at--1103--5811Chr08:24433493..24433517 (25 bp)
GACCGACGCTAGTGATAGTCCTACA
LOC_Os08g38860
OsAffx.23890.1.S1_at--981--8831Chr08:24433481..24433505 (25 bp)
TGATAGTCCTACAGATGAGCACCCT
LOC_Os08g38860
OsAffx.23890.1.S1_at--296--1311Chr08:24433469..24433493 (25 bp)
AGATGAGCACCCTACAAATCACGCG
LOC_Os08g38860
Target Sequence 
AGAACAGGACTTACTGGCAGTAGCAGATGGTGAAATTTGTGGTGGCAATGGCGGCAACGGACAAATTTCTCGGCTAAATC
CTTTTCAAGCGGAGAAACAGCCCATCTCACAAATCACAATCCTGCATCGCCATCCTAGCTCAACAGAAAAAAAACAGCGC
CAGCCGACCGACGCTAGTGATAGTCCTACAGATGAGCACCCTACAAATCACGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23890.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis