Browse Element(s) Details


OsAffx.2396.1.S1_at

Description tigr:9629.m06305
TID=OsAffx.2396.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6373011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63680OsAffx.23905.1.S1_at11/111+37263833..37266210Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g63690Os.6321.1.S1_at11/111+37269538..37271426Nematode-resistance protein, putative, expressed
LOC_Os01g63710Os.27265.1.S1_s_at11/111+37278922..37283576cell division control protein CDC6b, putative, expressed
LOC_Os01g63720OsAffx.11714.1.S1_at11/111+37287609..37288015hypothetical protein
LOC_Os01g63730OsAffx.2396.1.S1_at11/111+37291178..37291577hypothetical protein
LOC_Os01g63740OsAffx.25936.1.S1_s_at6/111+37302994..37306723transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63740OsAffx.25936.7.S1_s_at5/111+37302994..37306723transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63740OsAffx.25936.1.S1_at3/111+37302994..37306723transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63740OsAffx.25936.5.S1_x_at2/111+37302994..37306723transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63740OsAffx.25936.2.S1_x_at1/111+37302994..37306723transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63750OsAffx.18122.1.S1_x_at2/111+37307938..37308616hypothetical protein
LOC_Os01g63760Os.10827.1.S1_x_at9/111+37308980..37312768transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63760Os.46055.2.S1_x_at4/111+37308980..37312768transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2396.1.S1_at--841--9251Chr01:37291213..37291237 (25 bp)
TCCTCTGAACTGTCCTGGCTGGCTG
LOC_Os01g63730
OsAffx.2396.1.S1_at--193--8491Chr01:37291232..37291256 (25 bp)
TGGCTGCTGCTTTCACGTCAGGCGC
LOC_Os01g63730
OsAffx.2396.1.S1_at--546--1891Chr01:37291246..37291270 (25 bp)
ACGTCAGGCGCCAGTTGCGTTTGAG
LOC_Os01g63730
OsAffx.2396.1.S1_at--1001--6851Chr01:37291264..37291288 (25 bp)
GTTTGAGCCGCTCGATCGGAAAGCT
LOC_Os01g63730
OsAffx.2396.1.S1_at--31--5251Chr01:37291413..37291435 (23 bp)
GAAGGGCGCTTGGAATTTCGTTCTC
LOC_Os01g63730
OsAffx.2396.1.S1_at--937--8491Chr01:37291421..37291445 (25 bp)
TGGAATTTCGTTCTCGTCTTCGTCT
LOC_Os01g63730
OsAffx.2396.1.S1_at--515--10471Chr01:37291445..37291469 (25 bp)
TTACCCGTCCATGACTCGATCAAAT
LOC_Os01g63730
OsAffx.2396.1.S1_at--897--4451Chr01:37291480..37291504 (25 bp)
GCCTAGCGACTCATGCATGGTTGGG
LOC_Os01g63730
OsAffx.2396.1.S1_at--393--9051Chr01:37291493..37291517 (25 bp)
TGCATGGTTGGGTCCAGGGCAATTC
LOC_Os01g63730
OsAffx.2396.1.S1_at--301--7611Chr01:37291509..37291533 (25 bp)
GGGCAATTCAGCGTGGAGAGCTCAT
LOC_Os01g63730
OsAffx.2396.1.S1_at--319--8551Chr01:37291522..37291546 (25 bp)
TGGAGAGCTCATCAGCCTGCATCTG
LOC_Os01g63730
Target Sequence 
TCCTCTGAACTGTCCTGGCTGGCTGCTGCTTTCACGTCAGGCGCCAGTTGCGTTTGAGCCGCTCGATCGGAAAGCTGGAA
GGGCGCTTGGAATTTCGTTCTCGTCTTCGTCTTACCCGTCCATGACTCGATCAAATCGCGCCTACCGCCTAGCGACTCAT
GCATGGTTGGGTCCAGGGCAATTCAGCGTGGAGAGCTCATCAGCCTGCATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis