Browse Element(s) Details


OsAffx.23993.1.S1_at

Description gb:NM_190049.1
DB_XREF= gi:34907181
GEN=P0423A12.29
TID=OsAffx.23993.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0423A12.29 (P0423A12.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7088011/11CCAAT-binding transcription factor subunit A, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70820Os.37376.2.S1_x_at8/111+41321152..41323981expressed protein
LOC_Os01g70830Os.33625.3.S1_at1/111+41326677..41327733esterase PIR7A, putative, expressed
LOC_Os01g70830Os.33625.5.S1_x_at1/111+41326677..41327733esterase PIR7A, putative, expressed
LOC_Os01g70840Os.33625.3.S1_at11/111+41329283..41330580Esterase PIR7B, putative, expressed
LOC_Os01g70840Os.33625.5.S1_x_at11/111+41329283..41330580Esterase PIR7B, putative, expressed
LOC_Os01g70850Os.33625.4.S1_at11/111+41331154..41332828Esterase PIR7B, putative, expressed
LOC_Os01g70860Os.3417.1.S1_at11/111+41334170..41336091Esterase PIR7A, putative, expressed
LOC_Os01g70870Os.34720.1.S1_at11/111+41338179..41341912Zinc finger, C2H2 type family protein, expressed
LOC_Os01g70870Os.19512.2.S1_x_at2/111+41338179..41341912Zinc finger, C2H2 type family protein, expressed
LOC_Os01g70880OsAffx.23993.1.S1_at11/111+41348327..41348761CCAAT-binding transcription factor subunit A, putative
LOC_Os01g70890OsAffx.23994.1.S1_x_at11/111+41356233..41356766CCAAT-binding transcription factor subunit HAP3A, putative, expressed
LOC_Os01g70890OsAffx.23994.1.S1_at11/111+41356233..41356766CCAAT-binding transcription factor subunit HAP3A, putative, expressed
LOC_Os01g70900NANA1+41358624..41361797retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23993.1.S1_at--572--1851Chr01:41348734..41348758 (25 bp)
ACGAACGGGCAGGACAACCTGCTGC
LOC_Os01g70880
OsAffx.23993.1.S1_at--650--2631Chr01:41348719..41348743 (25 bp)
AACCTGCTGCCGATCGCCAACGTGG
LOC_Os01g70880
OsAffx.23993.1.S1_at--114--6391Chr01:41348708..41348732 (25 bp)
GATCGCCAACGTGGGCCGGATCATG
LOC_Os01g70880
OsAffx.23993.1.S1_at--262--4531Chr01:41348672..41348696 (25 bp)
GCCGCCGCAGGCGAAGATATCGAAG
LOC_Os01g70880
OsAffx.23993.1.S1_at--347--4111Chr01:41348661..41348685 (25 bp)
CGAAGATATCGAAGCGGGCCAAGGA
LOC_Os01g70880
OsAffx.23993.1.S1_at--98--9491Chr01:41348535..41348559 (25 bp)
TCTGCCACGCCATGAGGAGCCTCGG
LOC_Os01g70880
OsAffx.23993.1.S1_at--297--1771Chr01:41348478..41348502 (25 bp)
ACCTGCAGAGGTACCGCGAGGGCGA
LOC_Os01g70880
OsAffx.23993.1.S1_at--364--7551Chr01:41348382..41348406 (25 bp)
GTGGCGCCATACAGATCGACGTGAG
LOC_Os01g70880
OsAffx.23993.1.S1_at--23--2151Chr01:41348372..41348396 (25 bp)
ACAGATCGACGTGAGAGCTGAGCTC
LOC_Os01g70880
OsAffx.23993.1.S1_at--657--4811Chr01:41348351..41348375 (25 bp)
GCTCTCCATCTTCAGATCAGGCAAC
LOC_Os01g70880
OsAffx.23993.1.S1_at--302--4331Chr01:41348346..41348370 (25 bp)
CCATCTTCAGATCAGGCAACAACCA
LOC_Os01g70880
Target Sequence 
ACGAACGGGCAGGACAACCTGCTGCCGATCGCCAACGTGGGCCGGATCATGAAGGACGGGCTGCCGCCGCAGGCGAAGAT
ATCGAAGCGGGCCAAGGAGACGATCCAGGAGTGCGCGACGGAGTTCATCAGCTTCGTCACCGGCGAGGCGTCGGAGCGGT
GCCGGCGGGAGCGGCGGAAGACGGTGAACGGCGACGACGTCTGCCACGCCATGAGGAGCCTCGGCCTCGACCACTACGCC
GACGCCATGCACAGGTACCTGCAGAGGTACCGCGAGGGCGAGGAGCTCGCCGCGTCGCTCAACAGCAGCAGCAGCGCCGC
CGCCGCCGCCGCCGCCGCCGGCAGCAGGGGCGGTGGCGCCATACAGATCGACGTGAGAGCTGAGCTCTCCATCTTCAGAT
CAGGCAACAACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis