Browse Element(s) Details


OsAffx.23994.1.S1_x_at

Description tigr:9629.m07005
TID=OsAffx.23994.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Histone-like transcription factor (CBFNF-Y) and archaeal histone, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7089011/11CCAAT-binding transcription factor subunit HAP3A, putative, expressed
LOC_Os07g415801/11CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os03g299701/11CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os06g174801/11Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os08g077401/11Histone-like transcription factor and archaeal histone family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70850Os.33625.4.S1_at11/111+41331154..41332828Esterase PIR7B, putative, expressed
LOC_Os01g70860Os.3417.1.S1_at11/111+41334170..41336091Esterase PIR7A, putative, expressed
LOC_Os01g70870Os.34720.1.S1_at11/111+41338179..41341912Zinc finger, C2H2 type family protein, expressed
LOC_Os01g70870Os.19512.2.S1_x_at2/111+41338179..41341912Zinc finger, C2H2 type family protein, expressed
LOC_Os01g70880OsAffx.23993.1.S1_at11/111+41348327..41348761CCAAT-binding transcription factor subunit A, putative
LOC_Os01g70890OsAffx.23994.1.S1_x_at11/111+41356233..41356766CCAAT-binding transcription factor subunit HAP3A, putative, expressed
LOC_Os01g70890OsAffx.23994.1.S1_at11/111+41356233..41356766CCAAT-binding transcription factor subunit HAP3A, putative, expressed
LOC_Os01g70900NANA1+41358624..41361797retrotransposon protein, putative, unclassified
LOC_Os01g70920Os.24785.2.A1_at11/111+41379208..41383258Cullin-1, putative, expressed
LOC_Os01g70920Os.24785.1.A1_at11/111+41379208..41383258Cullin-1, putative, expressed
LOC_Os01g70920Os.24785.2.A1_x_at9/111+41379208..41383258Cullin-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0045449biological_processregulation of transcription
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23994.1.S1_x_at--739--9591Chr01:41356651..41356675 (25 bp)
TCATCAAGGAGCAGGACAGGTTGCT
LOC_Os01g70890
OsAffx.23994.1.S1_x_at--552--1011Chr01:41356634..41356658 (25 bp)
AGGTTGCTGCCAATCGCGAACGTGG
LOC_Os01g70890
OsAffx.23994.1.S1_x_at--4--7531Chr01:41356610..41356634 (25 bp)
GGGCGAATCATGAAGCAGATCCTCC
LOC_Os01g70890
OsAffx.23994.1.S1_x_at--557--4171Chr01:41356578..41356602 (25 bp)
CGCCAAGATCTCCAAGGAGGCCAAG
LOC_Os01g70890
OsAffx.23994.1.S1_x_at--1000--392Chr06:10137047..10137070 (24 bp)
ATCAGCTTCGTCACCGGCGAGGCCT
LOC_Os06g17480
OsAffx.23994.1.S1_x_at--1117--6214Chr03:17040529..17040548 (20 bp)
GAGGCCTCCGACAAGTGCCACAAGG
LOC_Os03g29970
OsAffx.23994.1.S1_x_at--535--2571Chr01:41356463..41356487 (25 bp)
AACGGCGACGACGTCTGCTGGGCCT
LOC_Os01g70890
OsAffx.23994.1.S1_x_at--283--8851Chr01:41356402..41356426 (25 bp)
TGCGCAGGTACCTCAACAAGTACCG
LOC_Os01g70890
OsAffx.23994.1.S1_x_at--935--1791Chr01:41356271..41356295 (25 bp)
ACCGCCGGTCATTTCATGTTCAACG
LOC_Os01g70890
OsAffx.23994.1.S1_x_at--15--4251Chr01:41356267..41356291 (25 bp)
CCGGTCATTTCATGTTCAACGCCAT
LOC_Os01g70890
OsAffx.23994.1.S1_x_at--134--9591Chr01:41356263..41356287 (25 bp)
TCATTTCATGTTCAACGCCATGGAC
LOC_Os01g70890
Target Sequence 
TCATCAAGGAGCAGGACAGGTTGCTGCCAATCGCGAACGTGGGGCGAATCATGAAGCAGATCCTCCCCCCCAACGCCAAG
ATCTCCAAGGAGGCCAAGGAGACGATGCAGGAGTGCGTCTCGGAGTTCATCAGCTTCGTCACCGGCGAGGCCTCCGACAA
GTGCCACAAGGAGAAGCGCAAGACGGTCAACGGCGACGACGTCTGCTGGGCCTTCGGCGCCCTCGGCTTCGACGACTACG
TCGACCCCATGCGCAGGTACCTCAACAAGTACCGCGAGCTCGAGGGCGACCGCGCCGCCGCCGCCGCCACCTCCCGCTCC
GGCGCCGGCGCCGCCGCGGGCCCCGACCACCCTTCCTCCTCCTCCTCCGCCGCCGCCGCCACCGCCGGTCATTTCATGTT
CAACGCCATGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23994.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis