Browse Element(s) Details


Os.24785.2.A1_at

Description gb:AK062782.1
DB_XREF= gi:32972800
TID=Os.24785.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24785 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-B04, full insert sequence.
FL= gb:AK062782.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7092011/11Cullin-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70890OsAffx.23994.1.S1_x_at11/111+41356233..41356766CCAAT-binding transcription factor subunit HAP3A, putative, expressed
LOC_Os01g70890OsAffx.23994.1.S1_at11/111+41356233..41356766CCAAT-binding transcription factor subunit HAP3A, putative, expressed
LOC_Os01g70900NANA1+41358624..41361797retrotransposon protein, putative, unclassified
LOC_Os01g70920Os.24785.2.A1_at11/111+41379208..41383258Cullin-1, putative, expressed
LOC_Os01g70920Os.24785.1.A1_at11/111+41379208..41383258Cullin-1, putative, expressed
LOC_Os01g70920Os.24785.2.A1_x_at9/111+41379208..41383258Cullin-1, putative, expressed
LOC_Os01g70930Os.45927.1.S1_at11/111+41384010..41385695oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g70930Os.45927.1.S1_x_at11/111+41384010..41385695oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g70930Os.51245.1.S1_at1/111+41384010..41385695oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g70940Os.26989.1.S1_a_at11/111+41387955..41393869Potassium transporter 7, putative, expressed
LOC_Os01g70950Os.23695.3.S1_x_at11/111+41393885..41397603sperm protein SSP411, putative, expressed
LOC_Os01g70950Os.23695.2.S1_at3/111+41393885..41397603sperm protein SSP411, putative, expressed
LOC_Os01g70960Os.6336.1.S1_at11/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70960Os.6336.2.S1_at10/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70960OsAffx.26985.1.S1_x_at1/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70970Os.18382.1.S1_at11/111+41406321..41408855Protein kinase domain containing protein, expressed
LOC_Os01g70970OsAffx.12696.1.S1_at1/111+41406321..41408855Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007049biological_processcell cycle
GO:0009733biological_processresponse to auxin stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0000151cellular_componentubiquitin ligase complex
GO:0000794cellular_componentcondensed nuclear chromosome
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24785.2.A1_at--195--7191Chr01:41380640..41380664 (25 bp)
GTCTGTGCAATGGTACTACAGTACT
LOC_Os01g70920
Os.24785.2.A1_at--1147--7831Chr01:41380651..41380675 (25 bp)
GGTACTACAGTACTAGACTGTTGCT
LOC_Os01g70920
Os.24785.2.A1_at--574--5731Chr01:41380666..41380690 (25 bp)
GACTGTTGCTAGTTTTTAAATCCAC
LOC_Os01g70920
Os.24785.2.A1_at--1077--3691Chr01:41380674..41380698 (25 bp)
CTAGTTTTTAAATCCACAATGTCAT
LOC_Os01g70920
Os.24785.2.A1_at--395--7131Chr01:41380694..41380718 (25 bp)
GTCATATTTCTAGACATAGCCAAGT
LOC_Os01g70920
Os.24785.2.A1_at--1068--9491Chr01:41380702..41380726 (25 bp)
TCTAGACATAGCCAAGTAAGTTTAT
LOC_Os01g70920
Os.24785.2.A1_at--357--4391Chr01:41380712..41380736 (25 bp)
GCCAAGTAAGTTTATTGTGTTGCAT
LOC_Os01g70920
Os.24785.2.A1_at--524--2831Chr01:41380719..41380743 (25 bp)
AAGTTTATTGTGTTGCATAATGATG
LOC_Os01g70920
Os.24785.2.A1_at--871--4951Chr01:41380733..41380757 (25 bp)
GCATAATGATGATTGAAATCCTCAA
LOC_Os01g70920
Os.24785.2.A1_at--801--5571Chr01:41380747..41380771 (25 bp)
GAAATCCTCAATTTGAATCTAATGA
LOC_Os01g70920
Os.24785.2.A1_at--972--5571Chr01:41380770..41380794 (25 bp)
GAAATGTCAACTTCATTTACCTCCA
LOC_Os01g70920
Target Sequence 
GTCTGTGCAATGGTACTACAGTACTAGACTGTTGCTAGTTTTTAAATCCACAATGTCATATTTCTAGACATAGCCAAGTA
AGTTTATTGTGTTGCATAATGATGATTGAAATCCTCAATTTGAATCTAATGAAATGTCAACTTCATTTACCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24785.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis