Browse Element(s) Details

Os.18382.1.S1_at

Description

gb:AK111919.1
DB_XREF= gi:37988582
TID=Os.18382.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18382 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) serinethreonine protein kinase-like protein (P0492G09.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-D03, full insert sequence.
FL= gb:AK111919.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g70970	11/11	Protein kinase domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g70920	Os.24785.2.A1_at	11/11	1	+	41379208..41383258	Cullin-1, putative, expressed
LOC_Os01g70920	Os.24785.1.A1_at	11/11	1	+	41379208..41383258	Cullin-1, putative, expressed
LOC_Os01g70920	Os.24785.2.A1_x_at	9/11	1	+	41379208..41383258	Cullin-1, putative, expressed
LOC_Os01g70930	Os.45927.1.S1_at	11/11	1	+	41384010..41385695	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g70930	Os.45927.1.S1_x_at	11/11	1	+	41384010..41385695	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g70930	Os.51245.1.S1_at	1/11	1	+	41384010..41385695	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g70940	Os.26989.1.S1_a_at	11/11	1	+	41387955..41393869	Potassium transporter 7, putative, expressed
LOC_Os01g70950	Os.23695.3.S1_x_at	11/11	1	+	41393885..41397603	sperm protein SSP411, putative, expressed
LOC_Os01g70950	Os.23695.2.S1_at	3/11	1	+	41393885..41397603	sperm protein SSP411, putative, expressed
LOC_Os01g70960	Os.6336.1.S1_at	11/11	1	+	41401280..41406111	Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70960	Os.6336.2.S1_at	10/11	1	+	41401280..41406111	Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70960	OsAffx.26985.1.S1_x_at	1/11	1	+	41401280..41406111	Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70970	Os.18382.1.S1_at	11/11	1	+	41406321..41408855	Protein kinase domain containing protein, expressed
LOC_Os01g70970	OsAffx.12696.1.S1_at	1/11	1	+	41406321..41408855	Protein kinase domain containing protein, expressed
LOC_Os01g70980	Os.9236.1.S1_at	11/11	1	+	41412751..41415017	expressed protein
LOC_Os01g70990	OsAffx.21835.1.S1_x_at	11/11	1	+	41417152..41417529	Glutaredoxin-like family protein
LOC_Os01g70990	OsAffx.21835.1.S1_at	11/11	1	+	41417152..41417529	Glutaredoxin-like family protein
LOC_Os01g71000	Os.38163.1.S1_at	11/11	1	+	41422760..41427216	Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g71010	Os.10088.1.S1_a_at	11/11	1	+	41427345..41431903	Lipase family protein, expressed
LOC_Os01g71020	OsAffx.11810.1.S1_x_at	11/11	1	+	41433477..41433785	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0007169	biological_process	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.18382.1.S1_at--100--151	1	Chr01:41407183..41407206 (24 bp)	AGCAGCATCTACCAAGACCCAGAGG	LOC_Os01g70970
Os.18382.1.S1_at--14--277	1	Chr01:41406995..41407193 (25 bp)	AAGACCCAGAGGTGCATTCCTTGGC	LOC_Os01g70970
Os.18382.1.S1_at--101--9	1	Chr01:41406980..41407004 (25 bp)	ATTCCTTGGCGCAGCTTTCTGAAAG	LOC_Os01g70970
Os.18382.1.S1_at--641--587	1	Chr01:41406895..41406919 (25 bp)	GAGCCTGATTTCTTCAGAACCAAGA	LOC_Os01g70970
Os.18382.1.S1_at--239--625	1	Chr01:41406715..41406739 (25 bp)	GATGGAGTCACATTTCAGTTCGAAC	LOC_Os01g70970
Os.18382.1.S1_at--759--219	1	Chr01:41406692..41406716 (25 bp)	ACAACGAGGTGACGGATCCAAGGTT	LOC_Os01g70970
Os.18382.1.S1_at--974--57	1	Chr01:41406677..41406701 (25 bp)	ATCCAAGGTTGGGAGGCAGCTTCAC	LOC_Os01g70970
Os.18382.1.S1_at--559--1073	1	Chr01:41406618..41406642 (25 bp)	TTGCAGTGCGTCAGCACGTCGGCGA	LOC_Os01g70970
Os.18382.1.S1_at--406--147	1	Chr01:41406542..41406566 (25 bp)	AGAAGGAGATGAGCCTCACCACCGT	LOC_Os01g70970
Os.18382.1.S1_at--834--1051	1	Chr01:41406474..41406498 (25 bp)	TTCACGTCCTGAACTTCGTAATCGA	LOC_Os01g70970
Os.18382.1.S1_at--5--65	1	Chr01:41406422..41406446 (25 bp)	ATGCATGCCTGATATTTGTAGCCAT	LOC_Os01g70970

Target Sequence

AGCAGCATCTACCAAGACCCAGAGGTGCATTCCTTGGCGCAGCTTTCTGAAAGCAGCGACGTGTACAGCTTTGGGGTTTT
TCTTTTGGAGCTCATCACTGGCAAAGAAGCAGCGAGCCTGATTTCTTCAGAACCAAGAGAACCTCTGGTTCATTGGATGG
AGTCACATTTCAGTTCGAACAACGAGGTGACGGATCCAAGGTTGGGAGGCAGCTTCACGTCGGAGGGGATGAAGGAGCTG
GTCGGGCTGACGTTGCAGTGCGTCAGCACGTCGGCGAGACGGCGGCCGAAGATGCGGCTGATCGCGGCGGAGCTCGACCG
GATTCTGGAGAAGGAGATGAGCCTCACCACCGTCATGGGCGACGGCACCGCCATTGTCACGCTCGGTAGCCAGCTCTTCA
CGTCCTGAACTTCGTAATCGACAGGGAGGTTGGCAGAATTAAATTTGCATGCATGCCTGATATTTGTAGCCAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis