Browse Element(s) Details


Os.23695.3.S1_x_at

Description gb:NM_190058.1
DB_XREF= gi:34907199
GEN=P0492G09.20
TID=Os.23695.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23695 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0492G09.20 (P0492G09.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0492G09.20 (P0492G09.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7095011/11sperm protein SSP411, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70920Os.24785.2.A1_at11/111+41379208..41383258Cullin-1, putative, expressed
LOC_Os01g70920Os.24785.1.A1_at11/111+41379208..41383258Cullin-1, putative, expressed
LOC_Os01g70920Os.24785.2.A1_x_at9/111+41379208..41383258Cullin-1, putative, expressed
LOC_Os01g70930Os.45927.1.S1_at11/111+41384010..41385695oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g70930Os.45927.1.S1_x_at11/111+41384010..41385695oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g70930Os.51245.1.S1_at1/111+41384010..41385695oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g70940Os.26989.1.S1_a_at11/111+41387955..41393869Potassium transporter 7, putative, expressed
LOC_Os01g70950Os.23695.3.S1_x_at11/111+41393885..41397603sperm protein SSP411, putative, expressed
LOC_Os01g70950Os.23695.2.S1_at3/111+41393885..41397603sperm protein SSP411, putative, expressed
LOC_Os01g70960Os.6336.1.S1_at11/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70960Os.6336.2.S1_at10/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70960OsAffx.26985.1.S1_x_at1/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70970Os.18382.1.S1_at11/111+41406321..41408855Protein kinase domain containing protein, expressed
LOC_Os01g70970OsAffx.12696.1.S1_at1/111+41406321..41408855Protein kinase domain containing protein, expressed
LOC_Os01g70980Os.9236.1.S1_at11/111+41412751..41415017expressed protein
LOC_Os01g70990OsAffx.21835.1.S1_x_at11/111+41417152..41417529Glutaredoxin-like family protein
LOC_Os01g70990OsAffx.21835.1.S1_at11/111+41417152..41417529Glutaredoxin-like family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23695.3.S1_x_at--793--7491Chr01:41395219..41395243 (25 bp)
GTGGTGGCTATTTCAATACTCCTGG
LOC_Os01g70950
Os.23695.3.S1_x_at--813--3091Chr01:41395205..41395229 (25 bp)
AATACTCCTGGAGAAGACCCTTCTG
LOC_Os01g70950
Os.23695.3.S1_x_at--957--9131Chr01:41395149..41395173 (25 bp)
TGCGGAGCCTTCTGGTAACTCAGTA
LOC_Os01g70950
Os.23695.3.S1_x_at--823--9011Chr01:41395064..41395085 (22 bp)
TGCAATGTTGAGCATCTCCTGGCTG
LOC_Os01g70950
Os.23695.3.S1_x_at--503--7591Chr01:41394598..41394622 (25 bp)
GGGAACTTGGTATAGCACTGCCGTT
LOC_Os01g70950
Os.23695.3.S1_x_at--821--7411Chr01:41394570..41394594 (25 bp)
GTGTTGTGCGGCAGACATGCTATCT
LOC_Os01g70950
Os.23695.3.S1_x_at--28--10171Chr01:41394550..41394574 (25 bp)
TATCTGTCCCGTCCAGGAAGCAGGT
LOC_Os01g70950
Os.23695.3.S1_x_at--408--3051Chr01:41394505..41394529 (25 bp)
AATCGACTGAATTCCGTGACATGGT
LOC_Os01g70950
Os.23695.3.S1_x_at--673--10711Chr01:41394481..41394505 (25 bp)
TTGCTGCCGCATTTTCGACATATGA
LOC_Os01g70950
Os.23695.3.S1_x_at--267--9931Chr01:41394342..41394366 (25 bp)
TAGACCCCAGGAACACCGAGGAAAT
LOC_Os01g70950
Os.23695.3.S1_x_at--908--9291Chr01:41394189..41394213 (25 bp)
TCCGCGTGCTGCTCAACAAGACAGT
LOC_Os01g70950
Target Sequence 
GTGGTGGCTATTTCAATACTCCTGGAGAAGACCCTTCTGTTCTTCTGCGTGTTAAAGAAGATTATGATGGTGCGGAGCCT
TCTGGTAACTCAGTAGCTGCTATCAACTTGATCAGATTGTCCAGTATATTTGATGCAGCAAAATCCGATGGTTACAAATG
CAATGTTGAGCATCTCCTGGCTGTCTTCCAGACGAGGCTGAGGGAACTTGGTATAGCACTGCCGTTGATGTGTTGTGCGG
CAGACATGCTATCTGTCCCGTCCAGGAAGCAGGTGGTTCTGGTGGGGAACAAAGAATCGACTGAATTCCGTGACATGGTT
GCTGCCGCATTTTCGACATATGATCCAAATAGAACTGTGATCCAAATAGACCCCAGGAACACCGAGGAAATGGGATTCTG
GGAGAGCAACAACGCCATCATCGCGCAGATGGCACGTAGCAGCCCACCGGAGAAGCCAGCGGTGGCGCACGTCTGCCAGG
ACTTCAAGTGCAGCCCTCCGGTGACCTCTGCAGACGCTCTCCGCGTGCTGCTCAACAAGACAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23695.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis