Browse Element(s) Details


OsAffx.21835.1.S1_at

Description tigr:9629.m07017
TID=OsAffx.21835.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glutaredoxin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7099011/11Glutaredoxin-like family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70940Os.26989.1.S1_a_at11/111+41387955..41393869Potassium transporter 7, putative, expressed
LOC_Os01g70950Os.23695.3.S1_x_at11/111+41393885..41397603sperm protein SSP411, putative, expressed
LOC_Os01g70950Os.23695.2.S1_at3/111+41393885..41397603sperm protein SSP411, putative, expressed
LOC_Os01g70960Os.6336.1.S1_at11/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70960Os.6336.2.S1_at10/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70960OsAffx.26985.1.S1_x_at1/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70970Os.18382.1.S1_at11/111+41406321..41408855Protein kinase domain containing protein, expressed
LOC_Os01g70970OsAffx.12696.1.S1_at1/111+41406321..41408855Protein kinase domain containing protein, expressed
LOC_Os01g70980Os.9236.1.S1_at11/111+41412751..41415017expressed protein
LOC_Os01g70990OsAffx.21835.1.S1_x_at11/111+41417152..41417529Glutaredoxin-like family protein
LOC_Os01g70990OsAffx.21835.1.S1_at11/111+41417152..41417529Glutaredoxin-like family protein
LOC_Os01g71000Os.38163.1.S1_at11/111+41422760..41427216Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g71010Os.10088.1.S1_a_at11/111+41427345..41431903Lipase family protein, expressed
LOC_Os01g71020OsAffx.11810.1.S1_x_at11/111+41433477..41433785hypothetical protein
LOC_Os01g71030OsAffx.11811.1.S1_at9/111+41436399..41438452hypothetical protein
LOC_Os01g71040Os.18275.1.S1_at11/111+41438853..41441707expressed protein
LOC_Os01g71040Os.18275.1.S2_at11/111+41438853..41441707expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0048441biological_processpetal development
GO:0048448biological_processstamen morphogenesis
GO:0048451biological_processpetal formation
GO:0048453biological_processsepal formation
GO:0048455biological_processstamen formation
GO:0005489molecular_functionelectron transporter activity
GO:0008794molecular_functionarsenate reductase (glutaredoxin) activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21835.1.S1_at--683--5951Chr01:41417208..41417232 (25 bp)
GAGCAACTGCTTCATGTGCCACGTG
LOC_Os01g70990
OsAffx.21835.1.S1_at--881--1971Chr01:41417213..41417237 (25 bp)
ACTGCTTCATGTGCCACGTGGTGAA
LOC_Os01g70990
OsAffx.21835.1.S1_at--729--771Chr01:41417221..41417245 (25 bp)
ATGTGCCACGTGGTGAAGACGCTCT
LOC_Os01g70990
OsAffx.21835.1.S1_at--758--1911Chr01:41417228..41417252 (25 bp)
ACGTGGTGAAGACGCTCTTCTCGGA
LOC_Os01g70990
OsAffx.21835.1.S1_at--911--8991Chr01:41417234..41417258 (25 bp)
TGAAGACGCTCTTCTCGGAGCTCGG
LOC_Os01g70990
OsAffx.21835.1.S1_at--573--3891Chr01:41417265..41417289 (25 bp)
CTGGGCGGTGCACGAGGTGGACAAG
LOC_Os01g70990
OsAffx.21835.1.S1_at--137--5171Chr01:41417300..41417324 (25 bp)
GCAAGGACGTCGAGAGGGCGCTCGC
LOC_Os01g70990
OsAffx.21835.1.S1_at--927--8391Chr01:41417449..41417473 (25 bp)
GGCGCCCTCTGGCTCAGAGATACGA
LOC_Os01g70990
OsAffx.21835.1.S1_at--204--8471Chr01:41417458..41417482 (25 bp)
TGGCTCAGAGATACGAAGTACTCCT
LOC_Os01g70990
OsAffx.21835.1.S1_at--139--5331Chr01:41417472..41417496 (25 bp)
GAAGTACTCCTATATACTACCAGCT
LOC_Os01g70990
OsAffx.21835.1.S1_at--195--7011Chr01:41417475..41417499 (25 bp)
GTACTCCTATATACTACCAGCTAAT
LOC_Os01g70990
Target Sequence 
GAGCAACTGCTTCATGTGCCACGTGGTGAAGACGCTCTTCTCGGAGCTCGGGGTGAGCTGGGCGGTGCACGAGGTGGACA
AGGACCCCAACGGCAAGGACGTCGAGAGGGCGCTCGCCGGAATGGTCGGCCGGACGCCGCCGGTGCCGGCCGTCTTCATC
GGCGGCAAGCTCGTCGGGCCCACCGACCAGGTCATGTCGCTCCACCTCGCCGGCAAGCTCGTCCCGCTCCTCCGCGAAGC
CGGCGCCCTCTGGCTCAGAGATACGAAGTACTCCTATATACTACCAGCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21835.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis