Browse Element(s) Details


Os.18275.1.S1_at

Description gb:AK111027.1
DB_XREF= gi:32996236
TID=Os.18275.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18275 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0504E02.1 (P0504E02.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-H05, full insert sequence.
FL= gb:AK111027.1 gb:AK107072.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7104011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70980Os.9236.1.S1_at11/111+41412751..41415017expressed protein
LOC_Os01g70990OsAffx.21835.1.S1_x_at11/111+41417152..41417529Glutaredoxin-like family protein
LOC_Os01g70990OsAffx.21835.1.S1_at11/111+41417152..41417529Glutaredoxin-like family protein
LOC_Os01g71000Os.38163.1.S1_at11/111+41422760..41427216Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g71010Os.10088.1.S1_a_at11/111+41427345..41431903Lipase family protein, expressed
LOC_Os01g71020OsAffx.11810.1.S1_x_at11/111+41433477..41433785hypothetical protein
LOC_Os01g71030OsAffx.11811.1.S1_at9/111+41436399..41438452hypothetical protein
LOC_Os01g71040Os.18275.1.S1_at11/111+41438853..41441707expressed protein
LOC_Os01g71040Os.18275.1.S2_at11/111+41438853..41441707expressed protein
LOC_Os01g71050Os.28078.1.S1_at11/111+41444065..41449088MSP domain containing protein, expressed
LOC_Os01g71060OsAffx.21834.1.S1_x_at11/111+41453387..41454526xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71070Os.30593.1.S1_at10/111+41460349..41461832xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71080Os.18185.1.S1_at11/111+41466060..41467498xylanase inhibitor TAXI-IV, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18275.1.S1_at--295--3971Chr01:41441608..41441632 (25 bp)
CGGTGGCTCCAAAGAAGCTGTGGCC
LOC_Os01g71040
Os.18275.1.S1_at--1076--10651Chr01:41441535..41441559 (25 bp)
TTCCGGCGGAAGTCCAGCGTCGTCG
LOC_Os01g71040
Os.18275.1.S1_at--826--4511Chr01:41441454..41441478 (25 bp)
GCCGCCGCCGTTGTCAAGGAAAGCA
LOC_Os01g71040
Os.18275.1.S1_at--605--5551Chr01:41441436..41441460 (25 bp)
GAAAGCAGTGTCAACGAAGAGGTCA
LOC_Os01g71040
Os.18275.1.S1_at--126--8391Chr01:41441398..41441422 (25 bp)
GGCGACGCCGAAAGAGAAGGCCATT
LOC_Os01g71040
Os.18275.1.S1_at--755--5631Chr01:41441307..41441331 (25 bp)
GACACCGGCGTAGTGATCGTCGAGA
LOC_Os01g71040
Os.18275.1.S1_at--81--2751Chr01:41441192..41441216 (25 bp)
AAGAAGCTGTCACCGATGATAAGAA
LOC_Os01g71040
Os.18275.1.S1_at--577--5311Chr01:41441161..41441185 (25 bp)
GAAGGTGATTCCGACCAAGGTCGCC
LOC_Os01g71040
Os.18275.1.S1_at--466--5351Chr01:41441074..41441098 (25 bp)
GAAGATCACTGACGCCAAGAACGAC
LOC_Os01g71040
Os.18275.1.S1_at--26--5451Chr01:41441056..41441080 (25 bp)
GAACGACGTCGCATCAACCGAGAAT
LOC_Os01g71040
Os.18275.1.S1_at--395--4971Chr01:41441046..41441070 (25 bp)
GCATCAACCGAGAATGTCGCCGCCG
LOC_Os01g71040
Target Sequence 
CGGTGGCTCCAAAGAAGCTGTGGCCACCGGCAACACCGTCGGCTCCACCGGCGGCAGATCCAGCCGCCGCCTCTTCCGGC
GGAAGTCCAGCGTCGTCGCCGCCGCCAACGCCGCCCCGTCTCACGCGCCGCCGCCGCCGTCCGACGAGAGCTCGGCCGCC
GCCGTTGTCAAGGAAAGCAGTGTCAACGAAGAGGTCAAGGGGAAGGGCAAGGCGACGCCGAAAGAGAAGGCCATTGATGA
GGAGAAGAAGGATGTCGAGGAGAGCACCACGGCGGCCGCCGCCGATGAGGTCGTCGTCAAGGACACCGGCGTAGTGATCG
TCGAGAAGACGACGACGGCGGCGGCGGCCAAGGCGACGCCGGCGGCCGTGAAGAAGATCGTCGAGGAGAAGAAAAAGGAG
GAGGCCAAGAACAAACAAGAAGCTGTCACCGATGATAAGAAGAAGGAGAAGGTGATTCCGACCAAGGTCGCCATTGATGA
GAAGAAAGAGGATGTAGTAGTGCCAATGAAGGAGGAGTTCGTCAAGGAGAAGGAGAAGATCACTGACGCCAAGAACGACG
TCGCATCAACCGAGAATGTCGCCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis