Browse Element(s) Details


Os.18275.1.S2_at

Description gb:AK107072.1
DB_XREF= gi:32992281
TID=Os.18275.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18275 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0504E02.1 (P0504E02.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-E12, full insert sequence.
FL= gb:AK111027.1 gb:AK107072.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7104011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70980Os.9236.1.S1_at11/111+41412751..41415017expressed protein
LOC_Os01g70990OsAffx.21835.1.S1_x_at11/111+41417152..41417529Glutaredoxin-like family protein
LOC_Os01g70990OsAffx.21835.1.S1_at11/111+41417152..41417529Glutaredoxin-like family protein
LOC_Os01g71000Os.38163.1.S1_at11/111+41422760..41427216Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g71010Os.10088.1.S1_a_at11/111+41427345..41431903Lipase family protein, expressed
LOC_Os01g71020OsAffx.11810.1.S1_x_at11/111+41433477..41433785hypothetical protein
LOC_Os01g71030OsAffx.11811.1.S1_at9/111+41436399..41438452hypothetical protein
LOC_Os01g71040Os.18275.1.S1_at11/111+41438853..41441707expressed protein
LOC_Os01g71040Os.18275.1.S2_at11/111+41438853..41441707expressed protein
LOC_Os01g71050Os.28078.1.S1_at11/111+41444065..41449088MSP domain containing protein, expressed
LOC_Os01g71060OsAffx.21834.1.S1_x_at11/111+41453387..41454526xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71070Os.30593.1.S1_at10/111+41460349..41461832xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71080Os.18185.1.S1_at11/111+41466060..41467498xylanase inhibitor TAXI-IV, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18275.1.S2_at--235--8051Chr01:41440318..41440342 (25 bp)
GGAGAAATCCATTGCCGTTTCGAAA
LOC_Os01g71040
Os.18275.1.S2_at--262--71Chr01:41439289..41439313 (25 bp)
ATTGAAGGAGGCCATGACAGCAACA
LOC_Os01g71040
Os.18275.1.S2_at--926--4131Chr01:41439190..41439214 (25 bp)
CGCTCCAATTGAGTCGCCGAAACAA
LOC_Os01g71040
Os.18275.1.S2_at--412--4511Chr01:41439150..41439174 (25 bp)
GCCGATCCAATTGAAGCACCGCTGA
LOC_Os01g71040
Os.18275.1.S2_at--398--5391Chr01:41439138..41439162 (25 bp)
GAAGCACCGCTGAATTGAAATTTGA
LOC_Os01g71040
Os.18275.1.S2_at--441--5991Chr01:41439109..41439133 (25 bp)
GAGACGCATCGTACCAAACAAAATG
LOC_Os01g71040
Os.18275.1.S2_at--750--9031Chr01:41439078..41439102 (25 bp)
TGCATGCCTCCACGAAATGTCCAAA
LOC_Os01g71040
Os.18275.1.S2_at--855--2271Chr01:41439064..41439088 (25 bp)
AAATGTCCAAATTTTCTCCCTTCAG
LOC_Os01g71040
Os.18275.1.S2_at--1009--6331Chr01:41439016..41439040 (25 bp)
GATGCTTATCTGTTCTTGTTGGTTA
LOC_Os01g71040
Os.18275.1.S2_at--753--5711Chr01:41438965..41438989 (25 bp)
GACTGCTAGTTTGTGCAATTTCGAG
LOC_Os01g71040
Os.18275.1.S2_at--826--10331Chr01:41438938..41438962 (25 bp)
TTTAACGTTGATTAGCATGTGCTGT
LOC_Os01g71040
Target Sequence 
GGAGAAATCCATTGCCGTTTCGAAAGATGACGATGGGCAATCAGATGGGAAACAAACAATTGAATTGAAGGAGGCCATGA
CAGCAACAAAAACGGATGAAAAAGGAGAGGAGCAGGTCGCTAAGGNATAAAAAGGATGACGAACAAGAACAACAAGCCAC
CGCCGCTCCAATTGAGTCGCCGAAACAAGAACAACAAGCCACCGCCGATCCAATTGAAGCACCGCTGAATTGAAATTTGA
AAATGAGACGCATCGTACCAAACAAAATGCATTGNTGCATGCCTCCACGAAATGTCCAAATTTTCTCCCTTCAGTTTATT
AGCAAGAAACTGTACATGATGCTTATCTGTTCTTGTTGGTTAAATACTTCATCTTCAACTGAGATGNTGACTGCTAGTTT
GTGCAATTTCGAGTATTTAACGTTGATTAGCATGTGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18275.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis