Browse Element(s) Details


Os.28078.1.S1_at

Description gb:AK103322.1
DB_XREF= gi:32988531
TID=Os.28078.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.28078 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0504E02.2 (P0504E02.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125J06, full insert sequence.
FL= gb:AK103322.1 gb:AK059500.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7105011/11MSP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71000Os.38163.1.S1_at11/111+41422760..41427216Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g71010Os.10088.1.S1_a_at11/111+41427345..41431903Lipase family protein, expressed
LOC_Os01g71020OsAffx.11810.1.S1_x_at11/111+41433477..41433785hypothetical protein
LOC_Os01g71030OsAffx.11811.1.S1_at9/111+41436399..41438452hypothetical protein
LOC_Os01g71040Os.18275.1.S1_at11/111+41438853..41441707expressed protein
LOC_Os01g71040Os.18275.1.S2_at11/111+41438853..41441707expressed protein
LOC_Os01g71050Os.28078.1.S1_at11/111+41444065..41449088MSP domain containing protein, expressed
LOC_Os01g71060OsAffx.21834.1.S1_x_at11/111+41453387..41454526xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71070Os.30593.1.S1_at10/111+41460349..41461832xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71080Os.18185.1.S1_at11/111+41466060..41467498xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71090Os.4856.1.S1_at11/111+41468853..41470301xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71100OsAffx.23995.2.S1_x_at11/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.50617.1.S2_x_at11/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.50617.1.S1_at10/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.27968.1.S1_x_at7/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.34865.2.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.1.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.2.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.1.S1_a_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046907biological_processintracellular transport
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28078.1.S1_at--32--8211Chr01:41444552..41444576 (25 bp)
GGAATCAAGTTGGTTTCCCCTTGCT
LOC_Os01g71050
Os.28078.1.S1_at--87--9311Chr01:41444537..41444561 (25 bp)
TCCCCTTGCTGTTTGTGGTTTATGT
LOC_Os01g71050
Os.28078.1.S1_at--523--3311Chr01:41444510..41444534 (25 bp)
CACTTCTTGGTACTTCTCTGGGTTA
LOC_Os01g71050
Os.28078.1.S1_at--987--4571Chr01:41444479..41444503 (25 bp)
GCGCTTATGAGGTCAAGTTCTTCCA
LOC_Os01g71050
Os.28078.1.S1_at--922--2371Chr01:41444453..41444477 (25 bp)
AAACCCATCAGCTGGACACTTCAGT
LOC_Os01g71050
Os.28078.1.S1_at--253--8071Chr01:41444384..41444408 (25 bp)
GGAGCATTCCTTAGCATCGTATTTC
LOC_Os01g71050
Os.28078.1.S1_at--378--1531Chr01:41444372..41444396 (25 bp)
AGCATCGTATTTCACTAGCCATTAT
LOC_Os01g71050
Os.28078.1.S1_at--405--8751Chr01:41444290..41444314 (25 bp)
TGTACAGAACCGTCCAAGAGATGCT
LOC_Os01g71050
Os.28078.1.S1_at--886--8291Chr01:41444262..41444286 (25 bp)
GGCTCAGTAGACTAACCCGGGATTT
LOC_Os01g71050
Os.28078.1.S1_at--508--3051Chr01:41444181..41444205 (25 bp)
AATCGGTGCAGTTTTCTTCGTTGTT
LOC_Os01g71050
Os.28078.1.S1_at--166--10791Chr01:41444161..41444185 (25 bp)
TTGTTTTCCTTTTCACCTGGGCTGG
LOC_Os01g71050
Target Sequence 
GGAATCAAGTTGGTTTCCCCTTGCTGTTTGTGGTTTATGTGGCACTTCTTGGTACTTCTCTGGGTTACCTCCTGCGCTTA
TGAGGTCAAGTTCTTCCAAAAACCCATCAGCTGGACACTTCAGTTTGTCACAAGAATTGGAGGGCAGCTACNCATCAATC
TTGAAAGGGGAGCATTCCTTAGCATCGTATTTCACTAGCCATTATGGTTTTGCATATAACAAAGGTACCAATTGCCTGCG
TGNATAGAACAGCTTTTACATCTGTACAGAACCGTCCAAGAGATGCTGCTGGCTCAGTAGACTAACCCGGGATTTCTTTT
CTCTCCCCTCACTGGGGTTTTTATAGTGTGTTGGATTCGGTTCTTTCTTAGAATCGGTGCAGTTTTCTTCGTTGTTTTCC
TTTTCACCTGGGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis