Browse Element(s) Details


Os.18185.1.S1_at

Description gb:C98239
DB_XREF= gi:3760985
DB_XREF=C98239
CLONE=C1310_8Z
TID=Os.18185.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18185 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative dermal glycoprotein precursor (P0504E02.8), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7108011/11xylanase inhibitor TAXI-IV, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71040Os.18275.1.S1_at11/111+41438853..41441707expressed protein
LOC_Os01g71040Os.18275.1.S2_at11/111+41438853..41441707expressed protein
LOC_Os01g71050Os.28078.1.S1_at11/111+41444065..41449088MSP domain containing protein, expressed
LOC_Os01g71060OsAffx.21834.1.S1_x_at11/111+41453387..41454526xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71070Os.30593.1.S1_at10/111+41460349..41461832xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71080Os.18185.1.S1_at11/111+41466060..41467498xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71090Os.4856.1.S1_at11/111+41468853..41470301xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71100OsAffx.23995.2.S1_x_at11/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.50617.1.S2_x_at11/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.50617.1.S1_at10/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.27968.1.S1_x_at7/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.34865.2.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.1.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.2.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.1.S1_a_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.34865.1.S1_s_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.34865.3.S1_x_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114OsAffx.23995.1.S1_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.34865.2.S1_x_at6/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.50617.1.S2_x_at1/111+41482666..41487575Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18185.1.S1_at--164--8691Chr01:41466634..41466658 (25 bp)
TGTGCACGAGGATCCCGTACACGGC
LOC_Os01g71080
Os.18185.1.S1_at--806--8591Chr01:41466583..41466607 (25 bp)
TGGTCGACGCGTTCGCCAGGGCCAC
LOC_Os01g71080
Os.18185.1.S1_at--873--5891Chr01:41466509..41466533 (25 bp)
GAGCTGTGCTACGACTCGCGCGATC
LOC_Os01g71080
Os.18185.1.S1_at--1097--2191Chr01:41466379..41466403 (25 bp)
ACAACACGGCGTGCCTCGCGGTGGT
LOC_Os01g71080
Os.18185.1.S1_at--256--1631Chr01:41466256..41466280 (25 bp)
AGCGGCTCGGATTCAGCGGCCTGCT
LOC_Os01g71080
Os.18185.1.S1_at--1036--9491Chr01:41466192..41466216 (25 bp)
TCTCGCCGCCTAGATCGAGTCGATT
LOC_Os01g71080
Os.18185.1.S1_at--468--1291Chr01:41466181..41466205 (25 bp)
AGATCGAGTCGATTCCTCGAGCTCA
LOC_Os01g71080
Os.18185.1.S1_at--31--6591Chr01:41466171..41466195 (25 bp)
GATTCCTCGAGCTCATAGCTTGCAT
LOC_Os01g71080
Os.18185.1.S1_at--115--5911Chr01:41466163..41466187 (25 bp)
GAGCTCATAGCTTGCATTTGCATCG
LOC_Os01g71080
Os.18185.1.S1_at--826--4951Chr01:41466150..41466174 (25 bp)
GCATTTGCATCGGAGATGTGCATGC
LOC_Os01g71080
Os.18185.1.S1_at--156--6514Chr09:18539708..18539762 (25 bp)
GATTTGTAACAAGTACATTTCGATG
NONE
Target Sequence 
TGTGCACGAGGATCCCGTACACGGCGCTCCGGCCGGACGTGTACCGAGCGGTGGTCGACGCGTTCGCCAGGGCCACCGCC
GGCCGGAAGCGCGTCACGCCGCCGCCGCCGCNGGCGNCGCCGTTCGAGCTGTGCTACGACTCGCGCGATCTGGGGTCGAC
GCGGCTGGNNTACGCCGTGCCGCAGATCGACCTGGTGCTGGAGGGCGGCAAGAACTGGACGGTGTTCGGCGGCAACTCGA
TGGCGCAGGTGAGCGACAACACGGCGTGCCTCGCGGTGGTGAAGGTGAAGGGGGAGAAGGGCANGCCNNNCGCCNCCGGC
GGCGATCATCGGAGGGTTCCAGATGGAGAACAACCTGGTGGTGTTCGACGAGGAGAAGCAGCGGCTCGGATTCAGCGGCC
TGCTCTGGGGGAGGCAGACCACCTGCAGCAACTTCAACTTCACTCTCGCCGCCTAGATCGAGTCGATTCCTCGAGCTCAT
AGCTTGCATTTGCATCGGAGATGTGCATGCATTTTTTTTTGGCATTATTATTATTATGAGTTGTGATTTGTAACAAGTAC
ATTTCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18185.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis