Browse Element(s) Details


OsAffx.23995.1.S1_at

Description tigr:9629.m07030
TID=OsAffx.23995.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7111411/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71070Os.30593.1.S1_at10/111+41460349..41461832xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71080Os.18185.1.S1_at11/111+41466060..41467498xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71090Os.4856.1.S1_at11/111+41468853..41470301xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71100OsAffx.23995.2.S1_x_at11/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.50617.1.S2_x_at11/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.50617.1.S1_at10/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.27968.1.S1_x_at7/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.34865.2.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.1.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.2.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.1.S1_a_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.34865.1.S1_s_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.34865.3.S1_x_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114OsAffx.23995.1.S1_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.34865.2.S1_x_at6/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.50617.1.S2_x_at1/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71130Os.30331.1.S1_at11/111+41493084..41494751xylanase inhibitor TAXI-III, putative, expressed
LOC_Os01g71140Os.36248.1.S1_at11/111+41496376..41497851xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71150OsAffx.26553.2.S1_at1/111+41499243..41499803hypothetical protein
LOC_Os01g71160OsAffx.23996.1.S1_at11/111+41503240..41504544xylanase inhibitor precursor, putative, expressed
LOC_Os01g71170OsAffx.11813.1.S1_at11/111+41506282..41507216expressed protein
LOC_Os01g71180OsAffx.23997.1.S1_at11/111+41510649..41513399PPR986-12, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23995.1.S1_at--461--4171Chr01:41483040..41483064 (25 bp)
CGCCTCCCTCCAGGCGTCGGCGTGC
LOC_Os01g71114
OsAffx.23995.1.S1_at--815--3751Chr01:41483016..41483040 (25 bp)
CTCATGTCATGACTCGACGTGGCCG
LOC_Os01g71114
OsAffx.23995.1.S1_at--854--9611Chr01:41483015..41483039 (25 bp)
TCATGTCATGACTCGACGTGGCCGC
LOC_Os01g71114
OsAffx.23995.1.S1_at--760--3511Chr01:41483014..41483038 (25 bp)
CATGTCATGACTCGACGTGGCCGCG
LOC_Os01g71114
OsAffx.23995.1.S1_at--832--751Chr01:41483013..41483037 (25 bp)
ATGTCATGACTCGACGTGGCCGCGC
LOC_Os01g71114
OsAffx.23995.1.S1_at--412--8731Chr01:41483012..41483036 (25 bp)
TGTCATGACTCGACGTGGCCGCGCG
LOC_Os01g71114
OsAffx.23995.1.S1_at--590--7391Chr01:41482703..41482727 (25 bp)
GTGTTGTAACTTTACCCCGATACAG
LOC_Os01g71114
OsAffx.23995.1.S1_at--769--8751Chr01:41482702..41482726 (25 bp)
TGTTGTAACTTTACCCCGATACAGT
LOC_Os01g71114
OsAffx.23995.1.S1_at--731--6631Chr01:41482701..41482725 (25 bp)
GTTGTAACTTTACCCCGATACAGTG
LOC_Os01g71114
OsAffx.23995.1.S1_at--994--10751Chr01:41482700..41482724 (25 bp)
TTGTAACTTTACCCCGATACAGTGA
LOC_Os01g71114
OsAffx.23995.1.S1_at--143--2511Chr01:41482696..41482720 (25 bp)
AACTTTACCCCGATACAGTGAAGAT
LOC_Os01g71114
Target Sequence 
CGCCTCCCTCCAGGCGTCGGCGTGCTCATGTCATGACTCGACGTGGCCGCGCGCGCCCTACACTGCACCGTCCTGCGACG
CCAAGGAAGGCGACGCCACCGAGGATCGATACCGTGCATGCCGAGCGTGAGCCCGTTGGAGGATTCACCTGCGCCCATGA
CACGCGGAGGCGGCGGCGGGGAACTGGATGATGATCGATCGGTGTTGAGTTGTGAACCAAAGTTCATTTGCACATAATAA
ATATCAGTTTCTGCTGGAGCGAAGCGCCCCCGCGGTATGGATCGTTATCCTTTAGGGTTTCACCTTCATGTATATACCTC
TTATAAGCCGCCATTCGGTGTTGTAACTTTACCCCGATACAGTGAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis